Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    31   0.16 
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    31   0.20 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   2.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.3  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   4.4  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   4.4  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    26   5.8  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.7  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   7.7  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +3

Query: 27  TGD--NLKPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKTFED 200
           TGD    K   LI GG GFIG N +DY +          +DK      +     SK    
Sbjct: 2   TGDYKEYKGYALITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQ 61

Query: 201 PRVEYKSANL 230
           P   +   +L
Sbjct: 62  PNFRFLEMDL 71


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +3

Query: 42  KPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPT----HS--KTFEDP 203
           K +V+IL   GF+ R L DY+    +   L+ + K+  +   L+ +    HS  +  +DP
Sbjct: 201 KLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDP 260

Query: 204 RVEYKSAN 227
            VE K A+
Sbjct: 261 AVESKLAD 268


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 129 LRVVDKTPPQLAFLNPTHSKTFED 200
           L +  KTPP L FL+ +    FED
Sbjct: 183 LEICQKTPPNLDFLDRSGDSVFED 206


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 42   KPRVLILGGCGFIGRNL-VDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSK 188
            K R+L+  GC F+G  L  D+ I N LV   +VVD     L FL+    K
Sbjct: 980  KLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTV--DLFFLSSRQRK 1027


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 508 MEQELKNMEGPETTPFIRPRYCVR 579
           +++ LK   GPE    I  RYC+R
Sbjct: 519 LDENLKTKSGPEKLYLIMARYCLR 542


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 335 VYAEGIVTLSLNVAKHCARMKVPRLVEISS-GQMCSNDKPQKEDCSI 472
           + A G++T   +  +   ++  PR ++ S  G +C++D P+ E C +
Sbjct: 475 ISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGL 521


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 581 NRETEEVFDTPSSSYGWEFYQAF*GENN*KLPFW 682
           +RET E  ++ +SS  ++ +  F  EN  +  FW
Sbjct: 290 HRETREYTESVASSEDFDIFDPFLAENEIETEFW 323


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 456 FWGLSLLHICPLEISTSLGTFILAQ 382
           FWGL    I  +++ST LGT +L +
Sbjct: 163 FWGLERKPIKGIQLSTKLGTKLLVK 187


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  GCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAF 167
           GC  + + LVD    ++ V GL+ +  TP +L F
Sbjct: 406 GCPSLEKPLVDKAAIDEAVEGLKKLTNTPVKLRF 439


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 580 PVHNSGAL*MV*FQVPPCFSALVPFALHPTFDRPRVN 470
           P H    +  + F + PC+SA +P A+       +VN
Sbjct: 3   PAHTFSLIFSLLFVINPCYSATLPLAIRRELTWGQVN 39


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 570 LCTGIGRQKKFLTPRLPLTVGNF 638
           LC G+  Q KF   R+PL V  F
Sbjct: 19  LCRGLNLQPKFAVFRVPLHVNKF 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,900
Number of Sequences: 5004
Number of extensions: 62015
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)