Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060252.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0550 + 9407280-9407375,9407474-9407560,9408230-9408317,940... 33 0.16
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085... 33 0.21
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 33 0.28
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 32 0.49
01_03_0042 - 11893004-11893645 32 0.49
05_06_0250 - 26682207-26683811 31 0.85
01_01_0044 - 326337-326500,326618-327398 31 0.85
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 30 1.5
07_03_1661 + 28441201-28441987,28442092-28442171,28442442-284425... 30 1.5
03_02_0573 - 9571040-9571234,9571352-9571444,9571735-9571818,957... 30 1.5
01_01_0043 - 321810-321973,322054-322846 30 1.5
12_01_0947 - 9396320-9396483,9396822-9397025,9397769-9398009,939... 29 2.6
12_01_0941 - 9316051-9316056,9316747-9317082 29 2.6
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928... 29 2.6
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918... 29 2.6
06_03_0796 - 24690115-24690247,24690622-24690808,24691060-246912... 29 4.5
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 6.0
12_01_0937 - 9289999-9290046,9290123-9290458 28 7.9
>03_02_0550 +
9407280-9407375,9407474-9407560,9408230-9408317,
9408871-9408962,9409068-9409132,9409220-9409308,
9409402-9409479,9409567-9409660,9409745-9409811,
9409907-9409970,9410096-9410136,9410221-9410412
Length = 350
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLIRND 116
R+L+ GG GFIG +LVD L+ N+
Sbjct: 36 RILVTGGAGFIGSHLVDKLMENE 58
>06_03_0019 +
15506702-15506896,15507741-15507875,15508264-15508501,
15508652-15508855,15508945-15509111
Length = 312
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP 152
RVL++GG G+IGR +V R D ++ + V D P
Sbjct: 10 RVLVIGGTGYIGRYIVAASAREDHLTSVLVRDPAP 44
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 51 VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPTH-SKTFEDPRVEYKS 221
+LI G GFI ++ + L+RN + V+DK L+ LNP+ S F+ + + S
Sbjct: 9 ILITGAAGFIASHVANRLVRNYPHYKIVVLDKLDYCSSLSNLNPSRPSPNFKFVKGDIAS 68
Query: 222 ANLIN 236
A+L+N
Sbjct: 69 ADLVN 73
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
RVL+ GG GF+G +LVD L+ R D V
Sbjct: 126 RVLVTGGAGFVGSHLVDRLVERGDSV 151
>01_03_0042 - 11893004-11893645
Length = 213
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
RVL+ GG GF+G +LVD L+ R D V
Sbjct: 114 RVLVTGGAGFVGSHLVDRLVERGDSV 139
>05_06_0250 - 26682207-26683811
Length = 534
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 425 HLRSLPVLVPSSWRSAWPR 369
+LR L V+VPSSW +WPR
Sbjct: 397 NLRKLVVVVPSSWDVSWPR 415
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 30 GDNLKPRVLILGGCGFIGRNLV 95
G+ K R+L++GG G+IGR++V
Sbjct: 5 GEEKKSRILVVGGTGYIGRHVV 26
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 310 NSRRSDRGGLCGRNRHPQPERGQALRQDEGTKTGRDLKWTDV 435
++RR DR G N HP +RG+ R+DE RD D+
Sbjct: 302 DARRRDRKGKYN-NDHPDADRGRGWRRDEHDDEDRDNAGRDI 342
>07_03_1661 +
28441201-28441987,28442092-28442171,28442442-28442525,
28443181-28443255,28443704-28444015
Length = 445
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
RV++ GG GF+G +LVD L+ R D V
Sbjct: 127 RVVVTGGAGFVGSHLVDRLLARGDSV 152
>03_02_0573 -
9571040-9571234,9571352-9571444,9571735-9571818,
9572401-9572480,9572609-9572759,9573067-9573579
Length = 371
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
RV++ GG GF+G +LVD L+ R D V
Sbjct: 109 RVVVTGGAGFVGSHLVDELLARGDSV 134
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +3
Query: 42 KPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKTFEDPRVEYKS 221
K R+L++GG G+IGR++V R + V D P A H TF D V
Sbjct: 11 KSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLH--TFRDAGVTLLH 68
Query: 222 ANLINQTS 245
+L + S
Sbjct: 69 GDLHDHAS 76
>12_01_0947 -
9396320-9396483,9396822-9397025,9397769-9398009,
9399052-9399387
Length = 314
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 42 KPRVLILGGCGFIGRNLV 95
K RVL++GG GF+GR +V
Sbjct: 5 KSRVLVVGGTGFVGRRVV 22
>12_01_0941 - 9316051-9316056,9316747-9317082
Length = 113
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 42 KPRVLILGGCGFIGRNLV 95
K RVLI+GG G+IGR +V
Sbjct: 5 KSRVLIVGGSGYIGRRIV 22
>12_01_0935 -
9277421-9277584,9277908-9278111,9280742-9280982,
9282165-9282494
Length = 312
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 42 KPRVLILGGCGFIGRNLV 95
K RVLI+GG G+IGR +V
Sbjct: 3 KSRVLIVGGTGYIGRRIV 20
>01_06_1271 +
35890317-35890762,35891113-35891173,35891669-35891813,
35891903-35891982,35892465-35892548,35892644-35892718,
35893150-35893242,35893315-35893503
Length = 390
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI 107
RV++ GG GF+G +LVD L+
Sbjct: 102 RVVVTGGAGFVGSHLVDRLL 121
>06_03_0796 -
24690115-24690247,24690622-24690808,24691060-24691222,
24691503-24691688,24692005-24692174,24692648-24692774
Length = 321
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 353 VTLSLNVAKHCARMKVPRLVEISS-GQMCSNDK-PQKEDCSIDPWTIE 490
VT +LNV K C KV R+V +SS + SN P+ + + D W+ E
Sbjct: 107 VTGTLNVLKACHEAKVKRVVMVSSIAAVFSNPNWPKDKAFTEDSWSDE 154
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 30 GDNLKPRVLILGGCGFIGRNLV 95
GD K R+LI+GG G +G+ +V
Sbjct: 4 GDRNKSRILIIGGTGHLGKFIV 25
>12_01_0937 - 9289999-9290046,9290123-9290458
Length = 127
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 42 KPRVLILGGCGFIGRNLV 95
K RVLI+GG G IGR +V
Sbjct: 5 KSRVLIVGGTGHIGRRIV 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,718,463
Number of Sequences: 37544
Number of extensions: 470031
Number of successful extensions: 1114
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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