Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59509| Best HMM Match : Protamine_P1 (HMM E-Value=7.6)              31   1.1  
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)             29   4.6  
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             29   4.6  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)             28   8.1  

>SB_59509| Best HMM Match : Protamine_P1 (HMM E-Value=7.6)
          Length = 59

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 280 MGAGSELCERNSRRSDRGGLCGRNRHP 360
           +   ++ C RN +RS  G LCGR R P
Sbjct: 5   LSGSAKRCRRNGKRSILGLLCGRQRRP 31


>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
          Length = 672

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 9   GEMSDTTGDNLKPRVLILGGCGFIGRNLVDYLI 107
           GE + +T +N  PRVL+ G  GFI  ++V  L+
Sbjct: 5   GETNASTAENT-PRVLVTGASGFIACHVVKQLL 36


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 85  RPMKPHPPSIKTRGFKLSPVVSDISP 8
           RP KP P   K +GFKL P V+  +P
Sbjct: 312 RPPKPAPQGRKGKGFKLGPKVALSTP 337


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 188  FRMCRVQESQLRRGFVHNTKPANQIVP 108
            FR+C+  E  ++ GF+   KP++ I P
Sbjct: 1948 FRLCKPSEDLMKIGFLRKEKPSSAIRP 1974


>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
          Length = 441

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 48  RVLILGGCGFIGRNLVDYLIR 110
           RVL+ GG GFIG  +V  LI+
Sbjct: 27  RVLVFGGNGFIGSEVVSRLIK 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,982,848
Number of Sequences: 59808
Number of extensions: 494859
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)