Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004929-1|AAH04929.1|  369|Homo sapiens hydroxy-delta-5-steroid...    30   6.7  
AK057436-1|BAB71486.1|  196|Homo sapiens protein ( Homo sapiens ...    30   6.7  
AF277719-1|AAG37824.1|  369|Homo sapiens 3 beta-hydroxy-delta 5-...    30   6.7  

>BC004929-1|AAH04929.1|  369|Homo sapiens hydroxy-delta-5-steroid
           dehydrogenase, 3 beta- and steroid delta-isomerase 7
           protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 54  LILGGCGFIGRNLVDYLI-RNDLVSGLRVVDK 146
           L+ GGCGF+G ++V  L+ R   +  LRV D+
Sbjct: 13  LVTGGCGFLGEHVVRMLLQREPRLGELRVFDQ 44


>AK057436-1|BAB71486.1|  196|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32874 fis, clone TESTI2004000, highly similar to
           Rattus norvegicus cca2 mRNA. ).
          Length = 196

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 54  LILGGCGFIGRNLVDYLI-RNDLVSGLRVVDK 146
           L+ GGCGF+G ++V  L+ R   +  LRV D+
Sbjct: 13  LVTGGCGFLGEHVVRMLLQREPRLGELRVFDQ 44


>AF277719-1|AAG37824.1|  369|Homo sapiens 3 beta-hydroxy-delta
           5-C27-steroid oxidoreductase protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 54  LILGGCGFIGRNLVDYLI-RNDLVSGLRVVDK 146
           L+ GGCGF+G ++V  L+ R   +  LRV D+
Sbjct: 13  LVTGGCGFLGEHVVRMLLQREPRLGELRVFDQ 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,169,453
Number of Sequences: 237096
Number of extensions: 2474519
Number of successful extensions: 5243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5239
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)