Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p pro...    98   1e-20
AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA...    98   1e-20
BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p pro...    88   9e-18
AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB...    88   9e-18
AY051913-1|AAK93337.1|  441|Drosophila melanogaster LD39959p pro...    30   2.6  
AE014296-1387|AAF50474.1|  441|Drosophila melanogaster CG7979-PA...    30   2.6  
AY060808-1|AAL28356.1|  284|Drosophila melanogaster GH27752p pro...    29   5.9  
AE014134-502|AAF51187.2|  284|Drosophila melanogaster CG8813-PA ...    29   5.9  

>BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p
           protein.
          Length = 371

 Score = 97.9 bits (233), Expect = 1e-20
 Identities = 45/83 (54%), Positives = 55/83 (66%)
 Frame = +3

Query: 42  KPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKTFEDPRVEYKS 221
           KP VLILGGCGFIGRNL  YL+ N+L   +R+ DKTPPQ+A+LN   ++ FE  RVE+ S
Sbjct: 4   KPTVLILGGCGFIGRNLATYLLDNELAQEIRLADKTPPQMAWLNEEQTRVFESDRVEFCS 63

Query: 222 ANLINQTSCASR*IQETTRHGGW 290
           ANLIN  SC +      T    W
Sbjct: 64  ANLINAASCKAAFAPHPTTGRAW 86



 Score = 88.2 bits (209), Expect = 9e-18
 Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 263 PGDDAPWGLVVNCASETRGGQTEAVYAEGIVTLSLNVAKHCARMKVPRLVEISSGQMCSN 442
           P     W +V+NCA+ETR  Q +AVY EGI+ LSLN A   A  +V R VE+SSG + S+
Sbjct: 80  PTTGRAWDIVINCAAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSS 139

Query: 443 DK-PQKEDCSIDPWTIEGRMKSKWNK 517
           +K P KEDC  DPWT   + K K  K
Sbjct: 140 EKTPLKEDCKTDPWTGVAKQKLKVEK 165


>AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA,
           isoform A protein.
          Length = 371

 Score = 97.9 bits (233), Expect = 1e-20
 Identities = 45/83 (54%), Positives = 55/83 (66%)
 Frame = +3

Query: 42  KPRVLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAFLNPTHSKTFEDPRVEYKS 221
           KP VLILGGCGFIGRNL  YL+ N+L   +R+ DKTPPQ+A+LN   ++ FE  RVE+ S
Sbjct: 4   KPTVLILGGCGFIGRNLATYLLDNELAQEIRLADKTPPQMAWLNEEQTRVFESDRVEFCS 63

Query: 222 ANLINQTSCASR*IQETTRHGGW 290
           ANLIN  SC +      T    W
Sbjct: 64  ANLINAASCKAAFAPHPTTGRAW 86



 Score = 88.2 bits (209), Expect = 9e-18
 Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 263 PGDDAPWGLVVNCASETRGGQTEAVYAEGIVTLSLNVAKHCARMKVPRLVEISSGQMCSN 442
           P     W +V+NCA+ETR  Q +AVY EGI+ LSLN A   A  +V R VE+SSG + S+
Sbjct: 80  PTTGRAWDIVINCAAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSS 139

Query: 443 DK-PQKEDCSIDPWTIEGRMKSKWNK 517
           +K P KEDC  DPWT   + K K  K
Sbjct: 140 EKTPLKEDCKTDPWTGVAKQKLKVEK 165


>BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p
           protein.
          Length = 329

 Score = 88.2 bits (209), Expect = 9e-18
 Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 263 PGDDAPWGLVVNCASETRGGQTEAVYAEGIVTLSLNVAKHCARMKVPRLVEISSGQMCSN 442
           P     W +V+NCA+ETR  Q +AVY EGI+ LSLN A   A  +V R VE+SSG + S+
Sbjct: 38  PTTGRAWDIVINCAAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSS 97

Query: 443 DK-PQKEDCSIDPWTIEGRMKSKWNK 517
           +K P KEDC  DPWT   + K K  K
Sbjct: 98  EKTPLKEDCKTDPWTGVAKQKLKVEK 123



 Score = 38.3 bits (85), Expect = 0.010
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 LAFLNPTHSKTFEDPRVEYKSANLINQTSCASR*IQETTRHGGW 290
           +A+LN   ++ FE  RVE+ SANLIN  SC +      T    W
Sbjct: 1   MAWLNEEQTRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAW 44


>AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB,
           isoform B protein.
          Length = 329

 Score = 88.2 bits (209), Expect = 9e-18
 Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 263 PGDDAPWGLVVNCASETRGGQTEAVYAEGIVTLSLNVAKHCARMKVPRLVEISSGQMCSN 442
           P     W +V+NCA+ETR  Q +AVY EGI+ LSLN A   A  +V R VE+SSG + S+
Sbjct: 38  PTTGRAWDIVINCAAETRANQDDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSS 97

Query: 443 DK-PQKEDCSIDPWTIEGRMKSKWNK 517
           +K P KEDC  DPWT   + K K  K
Sbjct: 98  EKTPLKEDCKTDPWTGVAKQKLKVEK 123



 Score = 38.3 bits (85), Expect = 0.010
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 LAFLNPTHSKTFEDPRVEYKSANLINQTSCASR*IQETTRHGGW 290
           +A+LN   ++ FE  RVE+ SANLIN  SC +      T    W
Sbjct: 1   MAWLNEEQTRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAW 44


>AY051913-1|AAK93337.1|  441|Drosophila melanogaster LD39959p
           protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 42  KPRVLILGGCGFIGRNLVDYLI 107
           + R+LI GG GF+G +LVD L+
Sbjct: 115 RKRILITGGAGFVGSHLVDDLM 136


>AE014296-1387|AAF50474.1|  441|Drosophila melanogaster CG7979-PA
           protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 42  KPRVLILGGCGFIGRNLVDYLI 107
           + R+LI GG GF+G +LVD L+
Sbjct: 115 RKRILITGGAGFVGSHLVDDLM 136


>AY060808-1|AAL28356.1|  284|Drosophila melanogaster GH27752p
           protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 413 EISSGQMCSNDKPQKEDCSIDPWTIEGRMKSKWNKS*KTWR 535
           E+SS +   N KP K   S    TIE    S WN +  T+R
Sbjct: 197 EMSSDECQKNYKPFKTSFSDSSQTIESGSSSHWNSAPTTYR 237


>AE014134-502|AAF51187.2|  284|Drosophila melanogaster CG8813-PA
           protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 413 EISSGQMCSNDKPQKEDCSIDPWTIEGRMKSKWNKS*KTWR 535
           E+SS +   N KP K   S    TIE    S WN +  T+R
Sbjct: 197 EMSSDECQKNYKPFKTSFSDSSQTIESGSSSHWNSAPTTYR 237


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,491,804
Number of Sequences: 53049
Number of extensions: 738130
Number of successful extensions: 1830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)