Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical p...    33   0.14 
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    32   0.33 
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    32   0.44 
U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva ...    31   0.77 
AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuroni...    31   0.77 
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    31   0.77 

>U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical
           protein C32D5.12 protein.
          Length = 357

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 51  VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDK 146
           V + GG G +GR +V  L+ N+ ++ +R++D+
Sbjct: 4   VAVTGGAGLVGRYVVQRLLENEQIAEIRIIDR 35


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 51  VLILGGCGFIGRNLVDYL 104
           V+I GGCGFIG N V+Y+
Sbjct: 8   VVITGGCGFIGSNFVNYI 25


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 51  VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTPPQLAF-LNPTH--SKTFEDPRVEYKS 221
           VLI GGCGFIG N +++       +     DK    LAF  +P H   +  E PR ++  
Sbjct: 11  VLITGGCGFIGSNYINFTFNKWKNTKFINYDK----LAFGASPLHVEKEIRESPRYKFVE 66

Query: 222 ANLINQ 239
           A L +Q
Sbjct: 67  AALEDQ 72


>U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva
           protein 1 protein.
          Length = 467

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 33  DNLKPRVLILGGCGFIGRNLVDYLI 107
           +  + R+LI GG GF+G +LVD L+
Sbjct: 133 EETRKRILITGGAGFVGSHLVDKLM 157


>AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuronic
           acid decarboxylase protein.
          Length = 467

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 33  DNLKPRVLILGGCGFIGRNLVDYLI 107
           +  + R+LI GG GF+G +LVD L+
Sbjct: 133 EETRKRILITGGAGFVGSHLVDKLM 157


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 481 DDRRSDEEQMEQELKNMEGPETTPFIRPRYCVRESGDRRSF*HP 612
           D+   DEE +E+E +  E  E  P ++P+   ++ G +R    P
Sbjct: 482 DEDEEDEEDVEEEDEEEEEEEDIPAVKPKVTEKQGGVKRKLDEP 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,033
Number of Sequences: 27780
Number of extensions: 362920
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)