Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.22 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.22 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 286 AGSELCERNSRRSDRGGLCGRNRHPQPERGQALRQDEGTKTGRDLK 423
           +GS +  RNS RS+  G CGR         +AL Q    +  ++ K
Sbjct: 30  SGSSI-SRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHK 74


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 286 AGSELCERNSRRSDRGGLCGRNRHPQPERGQALRQDEGTKTGRDLK 423
           +GS +  RNS RS+  G CGR         +AL Q    +  ++ K
Sbjct: 30  SGSSI-SRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHK 74


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 368 NVAKHCARMKVPRLVEISSGQMCSNDKPQKED 463
           N+  H A   +PR+  + + +  ++D+P K D
Sbjct: 420 NIRCHVAGEPLPRVQWLKNDEALNHDQPDKYD 451


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 570 LCTGIGRQKKFLTPRLPLTVGNFTKHFRAKTIENFPF 680
           LC  +GR K+F+    P+    F K         +PF
Sbjct: 250 LCNRLGRVKRFINWHEPIPEAYFPKLDSLVASRTWPF 286


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 53  NSWF*IITGCIRHFAS 6
           N W  I++GC+ +F++
Sbjct: 306 NEWLYILSGCLYYFST 321


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 112 TIWLAGFVLWTKPRLNW 162
           T+W+  FV+   P + W
Sbjct: 188 TVWILSFVICFPPLVGW 204


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 295 ELCERNSRRSDRGGLCGRNRH 357
           EL  R+SRR + GG+   + H
Sbjct: 259 ELVRRDSRRKNYGGVYHLDNH 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,011
Number of Sequences: 438
Number of extensions: 4668
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)