Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060252.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam... 34 0.10
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam... 34 0.10
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3... 33 0.13
At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase fam... 33 0.13
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 33 0.13
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 31 0.71
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso... 31 0.71
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 31 0.71
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam... 30 1.2
At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase fam... 30 1.2
At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase fam... 30 1.2
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam... 29 2.2
At1g79620.1 68414.m09283 leucine-rich repeat transmembrane prote... 29 2.2
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 29 3.8
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 29 3.8
At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar ... 28 6.6
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 28 6.6
At4g24110.1 68417.m03461 expressed protein 27 8.8
>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLIRND 116
R+L+ GG GFIG +LVD L++N+
Sbjct: 32 RILVTGGAGFIGSHLVDKLMQNE 54
>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLIRND 116
R+L+ GG GFIG +LVD L++N+
Sbjct: 32 RILVTGGAGFIGSHLVDKLMQNE 54
>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
identical to UDP-glucuronic acid decarboxylase
[Arabidopsis thaliana] GI:14595666; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family; identical to cDNA UDP-glucuronic acid
decarboxylase (UXS3) GI:14595665
Length = 342
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLIRND 116
R+LI GG GFIG +LVD L+ N+
Sbjct: 31 RILISGGAGFIGSHLVDKLMENE 53
>At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 341
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLIRND 116
R+LI GG GFIG +LVD L+ N+
Sbjct: 30 RILISGGAGFIGSHLVDKLMENE 52
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 51 VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPT-HSKTFEDPRVEYKS 221
+LI G GFI ++ + LIR+ + V+DK L LNP+ HS F+ + + S
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 222 ANLIN 236
A+L+N
Sbjct: 69 ADLVN 73
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 31.1 bits (67), Expect = 0.71
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 42 KPR-VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPTHSK-TFEDPRV 209
KP+ +LI G GFI ++ + L+R+ + V+DK L LNP+ S F+ +
Sbjct: 5 KPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKG 64
Query: 210 EYKSANLIN 236
+ SA+L+N
Sbjct: 65 DIASADLVN 73
>At2g43420.1 68415.m05396 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 561
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 30 GDNLKPRVLILGGCGFIGRNLVDYLIR 110
GD+ ++LGG GFIGR+LV L+R
Sbjct: 8 GDSHLKTCVVLGGRGFIGRSLVSRLLR 34
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 31.1 bits (67), Expect = 0.71
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +3
Query: 15 MSDTTGDNLKPR-VLILGGCGFIGRNLVDYLIRNDLVSGLRVVDKTP--PQLAFLNPTHS 185
M DTT KP+ +LI G GFI ++ + LIRN + V+DK L L+P+ S
Sbjct: 1 MDDTT---YKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFS 57
Query: 186 K-TFEDPRVEYKSANLIN 236
F+ + + S +L+N
Sbjct: 58 SPNFKFVKGDIASDDLVN 75
>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus CA
donor splice site at exon 1 and TA acceptor splice site
at exon 2
Length = 445
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
RV++ GG GF+G +LVD L+ R D V
Sbjct: 120 RVVVTGGAGFVGSHLVDRLMARGDTV 145
>At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 426
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
R+++ GG GF+G +LVD LI R D V
Sbjct: 121 RIVVTGGAGFVGSHLVDKLIGRGDEV 146
>At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 345
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
R+++ GG GF+G +LVD LI R D V
Sbjct: 121 RIVVTGGAGFVGSHLVDKLIGRGDEV 146
>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus AT
donor splice site at exon 1 and non-consensus AC
acceptor splice site at exon 2
Length = 443
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +3
Query: 48 RVLILGGCGFIGRNLVDYLI-RNDLV 122
RV++ GG GF+G +LVD L+ R D V
Sbjct: 122 RVVVTGGAGFVGSHLVDRLMARGDNV 147
>At1g79620.1 68414.m09283 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 971
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 9 GEMSDTTGDNLKPRVLILGGCGFIG 83
G ++ GD K +LIL GCGF G
Sbjct: 112 GSLTSRLGDLQKLNILILAGCGFTG 136
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 248 RITLDPGDDAPWGLVVNCASETRGGQT------EAVYAEGIVTLSLNVAKHCARMKVPRL 409
R+TL D P + E R GQ E V +G +++N K R+KVPRL
Sbjct: 355 RVTLTGSPDGPLVALAFKLEEGRFGQLTYLRVYEGVIKKGDFIINVNTGK---RIKVPRL 411
Query: 410 VEISSGQM 433
V + S M
Sbjct: 412 VRMHSNDM 419
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 248 RITLDPGDDAPWGLVVNCASETRGGQT------EAVYAEGIVTLSLNVAKHCARMKVPRL 409
R+TL D P + E R GQ E V +G +++N K R+KVPRL
Sbjct: 355 RVTLTGSPDGPLVALAFKLEEGRFGQLTYLRVYEGVIKKGDFIINVNTGK---RIKVPRL 411
Query: 410 VEISSGQM 433
V + S M
Sbjct: 412 VRMHSNDM 419
>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to
type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
(alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
Length = 234
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 121 TRSFLIK*STKFRPMKPHPPSIKTRGFKLSPVVSDIS 11
TRS S KFR + + S TR F +PV + IS
Sbjct: 38 TRSLAPNLSLKFRNRRTNSASATTRSFATTPVTASIS 74
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 30 GDNLKPRVLILGGCGFIGRNLVDYLIRN 113
G +++ +L+ GG GFIG + V L+++
Sbjct: 2 GSSVEQNILVTGGAGFIGTHTVVQLLKD 29
>At4g24110.1 68417.m03461 expressed protein
Length = 250
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 260 DPGDDAPWGLVVNCASETRGGQTEAVYAEGIVTLSLNVAKHCARMK 397
D GD W L C E G V AEG V + KH R K
Sbjct: 110 DEGDK--WKLECECEMEEEGAAEVVVAAEGHVATATMARKHRRRRK 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,147,697
Number of Sequences: 28952
Number of extensions: 356012
Number of successful extensions: 1018
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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