Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060251.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0089 + 670597-672210                                             29   3.5  
05_06_0263 + 26752759-26754393                                         29   4.6  
10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111     28   6.0  
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    28   8.0  
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822...    28   8.0  
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410...    28   8.0  

>11_01_0089 + 670597-672210
          Length = 537

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 351 LLALLGLPKRPSRRSA---PVPPIPRAMRMLYEASGAI 455
           LLA LGL   P   SA    +PP P A+ +L EAS A+
Sbjct: 98  LLAKLGLLHHPEFLSALLSRIPPSPSALSLLLEASPAV 135


>05_06_0263 + 26752759-26754393
          Length = 544

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 679 QDVTNVNIVNRPLKDPSL*VAR*NFEDQHHELTSSEGYST*VERIGEKRCSPGNLASAPS 500
           Q +  + +    LKD    V   + ED H +L   +  +  ++R+G  RC    +A+ P 
Sbjct: 412 QSLKKLTLAENELKDDGAVVIAKSLEDGHQDLKELDVSTNMLQRVG-ARCFAQAIANKPG 470

Query: 499 -VRADMNG 479
            V+ ++NG
Sbjct: 471 FVQLNING 478


>10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111
          Length = 829

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 LALLGLPKRPSRRSAPVPPIPRAMRMLYEASGA 452
           L LL LP    RRS+P PP+P    + Y  S A
Sbjct: 11  LLLLLLPHLRRRRSSPRPPVPAWRPLSYYPSAA 43


>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
            27603896-27603992,27604095-27604131,27604244-27604349,
            27604547-27604604,27604705-27604802,27604911-27605030,
            27605622-27605667,27606336-27606522,27606747-27607263,
            27607361-27607453,27608101-27608286,27608364-27608574,
            27609263-27609387,27609518-27609664,27610114-27610236,
            27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 526  PGNLASAPSVR-ADMNGPCLPQRPGMAPLAS*SIRMARG 413
            PG +A+ P+ R    N P   QRPG++P+   S   A+G
Sbjct: 940  PGPVANNPTSRFMPSNNPGFVQRPGLSPVQPSSPTQAQG 978


>07_01_0976 +
           8226194-8226473,8227116-8227291,8227366-8227486,
           8228684-8228757,8229269-8229332,8229969-8230039,
           8230279-8230368,8230491-8230661,8231668-8231739
          Length = 372

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 381 PSRRSAPVPPIPRAMRMLYEASGAIPGRCGKHG 479
           P RRS P+P  PRA+  L  +S      C K G
Sbjct: 14  PVRRSPPLPATPRALLRLPASSFPPWSNCAKSG 46


>03_05_0257 +
           22439915-22440275,22440280-22440627,22440962-22441015,
           22441390-22441763
          Length = 378

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 308 RGPRRSDACCCREAVIGVVGSAEETVASIRSSTAYTTR 421
           R PRR+DA  C EA     GS   T A + S     TR
Sbjct: 206 RAPRRADAAACGEAAQWDRGSRRRTSAIMSSVGMQETR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,849,520
Number of Sequences: 37544
Number of extensions: 357963
Number of successful extensions: 1274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)