Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060251.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29972| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05)               29   3.5  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           29   4.7  

>SB_29972| Best HMM Match : zf-CCHC (HMM E-Value=9.3e-05)
          Length = 285

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 202 AKSAISSRGIRTQ-GQRFGKRLTRTSSRTKQRHITTECGNMTGAMCSACVLGWVTTHDV 29
           A++ I  R +  Q  Q+ G+R+    S  K+  +T E G +  ++   C++G V ++++
Sbjct: 64  ARNVIYERLVFNQRNQKEGERMDNFVSELKRLSLTCEFGTLRDSLIRDCIVGGVLSNEL 122


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 338 CREAVIGVVGSAEETVASIRSSTAYTTRHANALRGKRSHTGPLRQTRPVH-ISTYRRSRC 514
           CR+ V+ V  S        RS+T+ TT  +   + +  HT P      +H +   ++  C
Sbjct: 7   CRDRVLCVFRSYMRHQTKTRSTTSQTTWRSWTWKTQSRHTHPTPAILCLHMLVLIKKGVC 66

Query: 515 EVPRRTS 535
             P RTS
Sbjct: 67  SKPLRTS 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,023,042
Number of Sequences: 59808
Number of extensions: 377452
Number of successful extensions: 1102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)