Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060251.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    28   5.0  
At1g80870.1 68414.m09489 protein kinase family protein contains ...    27   8.8  

>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 333 VAAEKQLLALLGLPKR--PSRRSAPVPPIPRAMRMLYEASGAIPG 461
           V+   Q+ +  G+PKR  P+R   P PP P+   +    S ++PG
Sbjct: 388 VSLHSQISSNNGIPKRLCPARPPPPPPPPPQVSEVPATMSHSLPG 432


>At1g80870.1 68414.m09489 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 692

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 238 TQNFNASNVDGYAKSAISSRGIRTQGQRFG-KRLTRTSSRTK 116
           T +F+ SNV G   S    RGI   G+ F  KRL   S +T+
Sbjct: 78  TNDFDESNVIGKGGSGTVFRGITRDGKLFAVKRLDNLSIQTE 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,506,059
Number of Sequences: 28952
Number of extensions: 253569
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)