Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060250.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q69297 Cluster: Immediate early gene protein; n=1; Gall...    36   0.93 
UniRef50_Q2RV50 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_A2EHM3 Cluster: AGC family protein kinase; n=1; Trichom...    33   4.9  
UniRef50_Q580Z0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q05XA4 Cluster: Outer membrane autotransporter barrel; ...    33   8.6  
UniRef50_Q4U2V9 Cluster: Hydroxyproline-rich glycoprotein GAS30 ...    33   8.6  

>UniRef50_Q69297 Cluster: Immediate early gene protein; n=1; Gallid
           herpesvirus 1|Rep: Immediate early gene protein - Gallid
           herpesvirus 1
          Length = 420

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 312 KNFHRNTN*NSI*LLRPSWSTFVRCISSSRSECRQL-GVCPAQ 437
           K+  R+   N   L RP W  FVRC +SSR+E ++L  V PAQ
Sbjct: 68  KHSRRSWERNRDELRRPIWRDFVRCPTSSRTETKELRNVTPAQ 110


>UniRef50_Q2RV50 Cluster: Putative uncharacterized protein; n=1;
           Rhodospirillum rubrum ATCC 11170|Rep: Putative
           uncharacterized protein - Rhodospirillum rubrum (strain
           ATCC 11170 / NCIB 8255)
          Length = 143

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 127 HMRGGEKAQGXAQTYSGCP---QRAGPCLRDGA 216
           H+ GG  AQG A   S CP   QR GPC R GA
Sbjct: 88  HIDGGPVAQGPALDGSACPNRRQRRGPCARRGA 120


>UniRef50_A2EHM3 Cluster: AGC family protein kinase; n=1;
           Trichomonas vaginalis G3|Rep: AGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 650

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 546 LCQRMSNRDVSSASVIPKATSSTTGDVLDTV-EPWCPAARGTRPAVGTHFYSKRCS 382
           LCQR+   DV +  VIP    S   DVLDT  E  C   R   P+  + F+S R S
Sbjct: 314 LCQRIQTGDVFALKVIPADDLSMKNDVLDTEREVMC---RALHPSTISLFWSFRAS 366


>UniRef50_Q580Z0 Cluster: Putative uncharacterized protein; n=1;
            Trypanosoma brucei|Rep: Putative uncharacterized protein
            - Trypanosoma brucei
          Length = 1486

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 216  SSVAETRARALRTPRICLCRSLGLLTP-SHVGARTGSGIT 100
            ++ +  R   ++  R+ LCR  G LTP  HVG R G+G T
Sbjct: 1391 NTTSSPRGGGVQDGRVGLCRRAGSLTPRRHVGTRRGTGTT 1430


>UniRef50_Q05XA4 Cluster: Outer membrane autotransporter barrel;
           n=2; Synechococcus sp. RS9916|Rep: Outer membrane
           autotransporter barrel - Synechococcus sp. RS9916
          Length = 1440

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 115 GARPHMRGGEKAQGXAQTYSGCPQRAGPCLRDGAVVKLIVS 237
           G   H +GG K QG  Q Y GC        ++G  +K+I S
Sbjct: 185 GTLYHTKGGNKGQGRIQAYGGCEANTISKSQNGEPIKVISS 225


>UniRef50_Q4U2V9 Cluster: Hydroxyproline-rich glycoprotein GAS30
           precursor; n=3; Chlamydomonas reinhardtii|Rep:
           Hydroxyproline-rich glycoprotein GAS30 precursor -
           Chlamydomonas reinhardtii
          Length = 451

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 159 RSLGLLTPSHVGARTGSGITRVCFNDKLKKFIVYINNCCCFGTFYEVELYLVP 1
           R   L+T +       +G+TR+CFN  LK      N+ CC    Y++E    P
Sbjct: 308 RGSRLMTTASNNITVVNGLTRICFNVALKDVCENPNSKCCEFELYKMEFEADP 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,563,451
Number of Sequences: 1657284
Number of extensions: 14011099
Number of successful extensions: 35057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35046
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)