Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060250.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    27   2.5  
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    26   4.4  

>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 306 SRVPAQHACTEETGRSSTPCTSNRHN*FNDSSVAETRARAL 184
           S+    +     + RS TP   N  + F DS  A+ +ARAL
Sbjct: 222 SKFRTDNYLARSSNRSGTPNIQNEQSRFFDSQQAQVQARAL 262


>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 459 TVEPWCPAARGTRPAVGTHFYSKR 388
           T +PWCP  R   P     F S +
Sbjct: 34  TKQPWCPTVRAALPLFNNAFNSSK 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,584
Number of Sequences: 5004
Number of extensions: 54527
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)