Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060250.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    25   0.87 
09_02_0140 + 4879319-4879968,4881443-4881942,4884230-4884368,488...    29   3.5  
03_05_0456 - 24498212-24499581,24502660-24503071                       29   3.5  
07_03_0937 - 22748970-22749302                                         28   6.0  
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293...    28   6.0  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    28   6.0  

>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 25.4 bits (53), Expect(2) = 0.87
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 140 PPRMWGRAPVAALPGF 93
           PP+MWG+AP    P +
Sbjct: 51  PPQMWGQAPPPPQPAY 66



 Score = 24.2 bits (50), Expect(2) = 0.87
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 152 WAFSPPRMWGRAP 114
           +A  PP+MWG+AP
Sbjct: 36  YAPPPPQMWGQAP 48


>09_02_0140 +
           4879319-4879968,4881443-4881942,4884230-4884368,
           4886005-4886156,4886267-4886532,4886902-4887028,
           4887111-4887179,4887270-4887518,4887636-4888012
          Length = 842

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 438 PGTTVLRYPEHPR*YYWSLSVSQMRYLHLYST 533
           P  T +RYP+ PR   W   +  MRY+ + +T
Sbjct: 211 PTDTFIRYPDDPRDRGWRPWIDTMRYVEVSTT 242


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 406 SADSWACAPRSRAPRFYGIQNIP 474
           +A  WA  P++RAP+ +G+  +P
Sbjct: 499 TASLWALVPQARAPKLWGVPMVP 521


>07_03_0937 - 22748970-22749302
          Length = 110

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 SAARGPVSPRRSCR*INCVDYLCTASSC 263
           SAARGP+ P   CR +N     C  +SC
Sbjct: 42  SAARGPLRPEVLCRHLNRALAECLVTSC 69


>04_04_1104 -
           30928475-30928501,30929008-30929110,30929287-30929340,
           30929803-30929895,30930063-30930140,30930416-30930527,
           30930618-30930756,30930823-30930910,30930984-30931079,
           30931675-30931781,30931874-30932009,30932089-30932186,
           30932954-30933047,30933132-30933301,30933749-30933819,
           30936066-30936194,30936552-30936654,30936764-30936907,
           30937123-30937245,30937482-30937563,30939044-30939120,
           30939261-30939315,30939365-30939443,30939544-30939620,
           30939739-30939869,30939947-30940120,30940245-30940310,
           30940937-30941572
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 511 RICDTESDQ*YYRGCSGYRRTVVPGC 434
           +IC+TE ++     CSG  R V PGC
Sbjct: 643 QICNTEEEKTLLLHCSGCSRHVHPGC 668


>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
            25826596-25827333,25827712-25827919,25828455-25830409,
            25830868-25830960,25831044-25831100,25831189-25831272,
            25831345-25831437,25831622-25832053,25833593-25833933,
            25834663-25835215
          Length = 2061

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 495  KATSSTTGDVLDTVE-PWCPAARGTRPAVGTHFYSKRCS 382
            +A +  TG+++DT + PW P   GT P+  T F++ R S
Sbjct: 1779 QAYNRRTGNMVDTFDLPWQPEFGGTHPSKST-FHTSRPS 1816


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,627,553
Number of Sequences: 37544
Number of extensions: 399515
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)