Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060250.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.7  
SB_3968| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   28   8.1  
SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27)                 28   8.1  
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 192 GPVSPRRSCR*INCVDYLCTASSCGQSPRCRRVA 293
           GP  P  S R   C   LC  ++C ++PR R VA
Sbjct: 741 GPTCPSNSKRFRLCESSLCANTNCTRNPRARCVA 774


>SB_3968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -3

Query: 552 KKLCQRMSNRDVSSASVIPKATSST--TGDVLDT-VEPWCPAARGTRPAVGT 406
           K +C+    R   S + +PK T++T  TG   +T   P  P  R T P  GT
Sbjct: 70  KFICRATQARPKESLTKLPKGTATTSPTGISAETPTRPSPPLTRDTGPGTGT 121


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 208 RGDTGPRAADTQN-MFVPXLGPSHPLACGGAHR 113
           RG T     D+ N + +P L P HP  C GA R
Sbjct: 772 RGVTPYPTPDSNNSVLLPPLLPCHPACCAGAER 804


>SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27)
          Length = 426

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 88  KTNPGNAATGARPHMRGGEKAQGXAQTYSGCPQRAGPCLRD--GAVVKLI 231
           +++P +   G RPHMR            + C +    CLRD    V KL+
Sbjct: 18  RSDPNSDEEGYRPHMRSFPATIPLRNIQANCEEWINMCLRDVSSGVAKLL 67


>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 511 RICDTESDQ*YYRGCSGYRRTVVPGCAGH 425
           R+CDT   + Y   C+GY    VPG   H
Sbjct: 521 RLCDTPCTRLYDTPCTGYATRHVPGNTTH 549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,445,661
Number of Sequences: 59808
Number of extensions: 456053
Number of successful extensions: 1144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)