Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060250.seq
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC059173-1|AAH59173.1|  524|Homo sapiens F-box and leucine-rich ...    31   5.1  
AK098777-1|BAC05410.1|  554|Homo sapiens protein ( Homo sapiens ...    31   5.1  

>BC059173-1|AAH59173.1|  524|Homo sapiens F-box and leucine-rich
           repeat protein 19 protein.
          Length = 524

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 555 FKKLCQRMSN-RDVSSASVIPKATSSTTGDVLDTVEPWCPAARGTRPAVGTHFYSKRCSG 379
           FK++CQ +    D SS+S    + S ++G  L   E    A  G RPA G+    +   G
Sbjct: 140 FKRMCQLLERVPDTSSSSSDSDSDSDSSGTSLSEDEAPGEARNGRRPARGSSGEKENRGG 199

Query: 378 RK 373
           R+
Sbjct: 200 RR 201


>AK098777-1|BAC05410.1|  554|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25911 fis, clone CBR04744. ).
          Length = 554

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 555 FKKLCQRMSN-RDVSSASVIPKATSSTTGDVLDTVEPWCPAARGTRPAVGTHFYSKRCSG 379
           FK++CQ +    D SS+S    + S ++G  L   E    A  G RPA G+    +   G
Sbjct: 199 FKRMCQLLERVPDTSSSSSDSDSDSDSSGTSLSEDEAPGEARNGRRPARGSSGEKENRGG 258

Query: 378 RK 373
           R+
Sbjct: 259 RR 260


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,955,459
Number of Sequences: 237096
Number of extensions: 2284507
Number of successful extensions: 12848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12848
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)