Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060250.seq
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.4
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 29 3.1
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 29 3.1
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 29 3.1
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC024811-6|AAP68913.1| 90|Caenorhabditis elegans Hypothetical ... 28 5.4
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 27 9.5
U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical pr... 27 9.5
U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 94 NPGNAATGARPHMRGGEKAQGXAQTYSGCPQRAG 195
NPG+A +P G + A G Y CP R+G
Sbjct: 209 NPGSAGADGQPGGPGQDGAPGSDAAYCPCPPRSG 242
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 94 NPGNAATGARPHMRGGEKAQGXAQTYSGCPQRAG 195
NPG+A +P G + A G Y CP R+G
Sbjct: 209 NPGSAGADGQPGGPGQDGAPGSDAAYCPCPPRSG 242
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 97 PGNAATGARPHMRGGEKAQGXAQTYSGCPQRA 192
PGNA T P G A G Y CP RA
Sbjct: 240 PGNAGTPGTPGAPGNAGAPGGDAAYCPCPARA 271
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 97 PGNAATGARPHMRGGEKAQGXAQTYSGCPQRA 192
PGNA + +P GG G Y CP R+
Sbjct: 256 PGNAGSDGQPGAPGGPGLPGNDAAYCACPPRS 287
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 97 PGNAATGARPHMRGGEKAQGXAQTYSGCPQRA 192
PGNA + +P GG G Y CP R+
Sbjct: 256 PGNAGSDGQPGAPGGPGLPGNDAAYCACPPRS 287
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 97 PGNAATGARPHMRGGEKAQGXAQTYSGCPQRA 192
PGNA + +P GG G Y CP R+
Sbjct: 268 PGNAGSDGQPGAPGGPGLPGNDAAYCACPPRS 299
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 233 TINLTTAPSRRHGPARCGHPEYVCAXPWAFS 141
T+N+ T P + + + PE+VC P +FS
Sbjct: 429 TVNVPTLPRKDYNQSPAHTPEHVCPLPRSFS 459
>AC024811-6|AAP68913.1| 90|Caenorhabditis elegans Hypothetical
protein Y54E10BL.1 protein.
Length = 90
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 415 SWACAPRSRAPRFYGI-QNIPGSTTGRFRYHR 507
+W+ +PR RA R G+ ++ P +++G R HR
Sbjct: 44 AWSTSPRRRASRIPGLCEHCPPASSGTARNHR 75
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 97 PGNAATGARPHMRGGEKAQGXAQTYSGCPQRA 192
PGNA +P GG G Y CP R+
Sbjct: 256 PGNAGPDGQPGSPGGPGLPGNDAAYCPCPPRS 287
>U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical
protein F45E1.7a protein.
Length = 489
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 412 RHSLLLEEMQRTKVDHE 362
RH L EE+QRTKVD++
Sbjct: 185 RHEKLKEEVQRTKVDYQ 201
>U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical
protein F45E1.7b protein.
Length = 495
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 412 RHSLLLEEMQRTKVDHE 362
RH L EE+QRTKVD++
Sbjct: 191 RHEKLKEEVQRTKVDYQ 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,764
Number of Sequences: 27780
Number of extensions: 331621
Number of successful extensions: 847
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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