Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060250.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    30   1.3  
At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3...    27   8.8  

>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = +1

Query: 298 DSG*EKTFTEILIKT-LFDYYDLHGPLSSAASLRVEVSADSWACAPRSRAPRFYGIQNIP 474
           D G   TF  ++  T  F+  +L G     A+ + E+S D      R    RF G+Q   
Sbjct: 691 DIGVPITFDNVVRATGNFNASNLIGNGGFGATYKAEISQDVVVAIKRLSIGRFQGVQQFH 750

Query: 475 G--STTGRFRYHRCATYISIRHPLTQLF 552
               T GR R+    T I      T++F
Sbjct: 751 AEIKTLGRLRHPNLVTLIGYHASETEMF 778


>At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3) /
           HD-ZIP protein 3 identical to Homeobox-leucine zipper
           protein HAT3 (SP:P46602) [Arabidopsis thaliana]
          Length = 315

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 543 CQRMSNRDVSSASVIPKATSSTTGDVLDTVEPWCPAARGTRPAVGTH 403
           C+R++    SS+SV P   +S++   +  + PW       RPA G+H
Sbjct: 272 CERVAVTS-SSSSVAPPVMNSSSP--MGPMSPWAAMPLRQRPAAGSH 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,460
Number of Sequences: 28952
Number of extensions: 298436
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)