Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060249.seq
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K3X8 Cluster: Putative uncharacterized protein; n=9; ...    36   0.91 
UniRef50_A5BKB3 Cluster: Putative uncharacterized protein; n=2; ...    35   2.1  
UniRef50_A7HK06 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  
UniRef50_Q54SK9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_A5K3X8 Cluster: Putative uncharacterized protein; n=9;
           cellular organisms|Rep: Putative uncharacterized protein
           - Plasmodium vivax
          Length = 596

 Score = 35.9 bits (79), Expect = 0.91
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
 Frame = +1

Query: 145 YKLFKYY*KSPKFNKNI---DVQKC*FPKTLVAASNKCKPNLFINRYILKRLNSTNFNFS 315
           Y++FK++ K  KF KN+   DV+       L+ A  KC  N+ I +YI+K +N+ +F   
Sbjct: 241 YEIFKFFTK--KFYKNLKERDVEPHHLT-LLLNAFAKCNININILKYIIKYMNNDHFVNQ 297

Query: 316 KCSMRISLGKSEVIDK*NHKGCRCIRGLR---IFIMATLP----SGIFWRERKCRKLK*S 474
              + I+      + K NHK    +  L+   I I+ T+P    S I W      KLK  
Sbjct: 298 LSYVNIT-NAVHYMAKFNHKNKFFLNRLKDKVIEIVDTIPQREFSNIMW---SLSKLKVK 353

Query: 475 RWT*IFWVFEEVNKILMNSDQI 540
             T  F   ++V KI+ + D +
Sbjct: 354 DDTFYFVSLQKVKKIIPSMDMM 375


>UniRef50_A5BKB3 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 745

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 365 YLSMTSDLPKDILMEHFEKLKLVEFNLFKIYLFINKFG 252
           YL+MT +LPKD   EH  +++   F L   +L+   FG
Sbjct: 628 YLTMTGELPKDEKHEHKVRIQAAHFTLINDHLYRRSFG 665


>UniRef50_A7HK06 Cluster: Putative uncharacterized protein; n=1;
           Fervidobacterium nodosum Rt17-B1|Rep: Putative
           uncharacterized protein - Fervidobacterium nodosum
           Rt17-B1
          Length = 124

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 107 KFKQINETFQVFFTNYLNIIKKVQSSTKIS 196
           KFK++NE    F TNY  II+K+Q+   +S
Sbjct: 21  KFKKLNEAKNEFSTNYYTIIEKIQNIGSLS 50


>UniRef50_Q54SK9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 753

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 484 TSNDSISIFYTCVPAKKFQMAVLPL*KCATLECNG 380
           ++N  I ++  C+P K F++  +P  KC+ ++C G
Sbjct: 163 STNQIIELWSICIPQKDFEVYNIPPQKCSEIDCQG 197


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,076,383
Number of Sequences: 1657284
Number of extensions: 11809753
Number of successful extensions: 23183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23180
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)