Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060249.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    27   2.5  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    26   4.4  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   4.4  

>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 208 IFGHRYFC*TLDFFNNI*IVCKEHLKCFVNLFKFIIQFH*RYPPRKLADW 59
           IFG +++C  LDF  +  ++ KE  +   ++   ++ FH    P ++  W
Sbjct: 287 IFGRKFYCIPLDFKESNIVLKKESFRVPESVANDLVPFH----PNEVLQW 332


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 524 IKILLTSSKTQKIHVQRLYFNFLHLRSRQKIPDGSVAIIKMRNPRM 387
           IK  L  S+  K+ + + +FN L ++ R KI     +++  R P+M
Sbjct: 3   IKFFLLVSRQGKVRLAK-WFNTLSIKERAKIIRDVSSLVITRKPKM 47


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 396 VAHFYNGNTAIWNFLAGTQV*KIEIESLDV 485
           +A  YNG   IWN+   T V   +I  + +
Sbjct: 30  IASHYNGQVGIWNYNTQTLVRSFDINDVPI 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,648
Number of Sequences: 5004
Number of extensions: 55416
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)