Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060249.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846...    28   6.0  
04_04_1504 + 34035109-34035198,34035586-34036002,34038385-34039017     28   7.9  

>01_07_0171 +
           41683670-41683872,41684386-41684483,41684614-41684692,
           41684845-41685000,41685021-41685146,41686249-41686540,
           41686978-41687053,41687295-41687392,41687523-41687665,
           41688522-41688579,41689055-41689213,41689291-41689343,
           41689978-41690212,41690317-41690403,41690607-41690711
          Length = 655

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 160 YY*KSPKFNKNIDVQKC*FPKTLVAASNKCKPNLFINRYILKRLNSTNFNFSKCSMRISL 339
           Y       N N DV+        +  S+     L+   Y L    +TN+ FS CS  IS 
Sbjct: 302 YLTSQESLNYNSDVRTAENCAEEIILSDSDSEELYTENYPLIGKTTTNYRFSDCSASISP 361

Query: 340 GKSE 351
             SE
Sbjct: 362 RSSE 365


>04_04_1504 + 34035109-34035198,34035586-34036002,34038385-34039017
          Length = 379

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = -2

Query: 461 FLHLRSRQKIPDGSVAIIKM------RNPRMQRHPL*FYLSMTSDLPKDILMEHF-EKLK 303
           FLH R+ +  P G++ I+ +      R P  Q +    Y SM  D  +D++ E   +  K
Sbjct: 211 FLHCRAAEMKPGGAIFIVSLGRLSSTRGPTEQGYIYEVYCSMFEDSLRDLIEEEMVDGEK 270

Query: 302 LVEFNL 285
           +  FN+
Sbjct: 271 MDNFNV 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,043
Number of Sequences: 37544
Number of extensions: 290279
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)