Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060249.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50651| Best HMM Match : Retrotrans_gag (HMM E-Value=2)              29   4.6  
SB_57369| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.9)             29   4.6  
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_50651| Best HMM Match : Retrotrans_gag (HMM E-Value=2)
          Length = 211

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 77  WRIPLMELNYKFKQINETFQVFFTNYLNIIKK 172
           + IP+ EL  +  ++    +VFFT Y+N+ +K
Sbjct: 56  YAIPIAELTTEMAKLLRDVKVFFTKYINLERK 87


>SB_57369| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.9)
          Length = 138

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 77  WRIPLMELNYKFKQINETFQVFFTNYLNIIKK 172
           + IP+ EL  +  ++    +VFFT Y+N+ +K
Sbjct: 56  YAIPIAELTTEMAKLLRDVKVFFTKYINLERK 87


>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 450 AFPPKNSRWQCCHYKNAQPSNATASFMILLINDFRLTQGYPHGTFRKIK 304
           +F   N++   C  KNA+ +N + +++ L  NDF+        +FR  K
Sbjct: 159 SFATANNKTCNCRQKNAKDNNTSETYVGLTENDFKTRYRNHTASFRHAK 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,465,569
Number of Sequences: 59808
Number of extensions: 342414
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)