Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060249.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ...    30   1.6  
At5g48040.1 68418.m05936 hypothetical protein                          29   2.8  
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    29   3.7  
At5g25300.1 68418.m03001 F-box family protein PF0064: F-box doma...    27   8.6  
At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11) ide...    27   8.6  
At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11) ide...    27   8.6  
At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11) ide...    27   8.6  

>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
            homeobox 1 (GP:12002853) {Picea abies}; contains Pfam
           PF00046: Homeobox domain and Pfam PF01852: START domain
          Length = 708

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 383 RHPL*FYLSMTSDLPKDILMEHFEKLKLVEFN-LFKI 276
           R P    L  T+ LPK +L++HF++L  +E N +F+I
Sbjct: 192 RRPFTRELINTTPLPKPVLLQHFQQLSQLEKNRMFEI 228


>At5g48040.1 68418.m05936 hypothetical protein
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 386 QRHPL*FYLSMTSDLPKDILMEHFEKLKLVE 294
           +RHP  FY+SM  D    IL E +++  L+E
Sbjct: 316 ERHPGIFYISMKCDTQTVILREAYDRRHLIE 346


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
            domain-containing protein contains Pfam profiles PF00612:
            IQ calmodulin-binding motif, PF02179: BAG (Apoptosis
            regulator Bcl-2 protein) domain
          Length = 1043

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 89   LMELNYKFKQINETFQVFFTNYLNIIKKVQSSTKISMSKNVNFQKR*WRRR 241
            LME N +FK+  ET        L +I K+ S  K S+ K ++ +K+   RR
Sbjct: 979  LMEENQRFKETMETLVKAGREQLEVISKLTSRVK-SLEKKLSHKKKTQIRR 1028


>At5g25300.1 68418.m03001 F-box family protein PF0064: F-box domain;
           similar to F-box protein family, AtFBX7 (GI:20197899)
           [Arabidopsis thaliana]
          Length = 464

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 350 SDLPKDILMEHFEKLKLVEFNLFKI 276
           S+LP DIL   FE+L  V+F   K+
Sbjct: 416 SELPGDILRSVFERLSFVDFQRAKV 440


>At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 359

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 408 KNAQPSNATASFMILLINDFRLTQGYPHGTFRK 310
           +N   ++AT ++ +LL N FR+  GY    F++
Sbjct: 317 RNRTQNDATVTYYLLLDNRFRVPSGYLESEFQE 349


>At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 512

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 408 KNAQPSNATASFMILLINDFRLTQGYPHGTFRK 310
           +N   ++AT ++ +LL N FR+  GY    F++
Sbjct: 317 RNRTQNDATVTYYLLLDNRFRVPSGYLESEFQE 349


>At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 512

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 408 KNAQPSNATASFMILLINDFRLTQGYPHGTFRK 310
           +N   ++AT ++ +LL N FR+  GY    F++
Sbjct: 317 RNRTQNDATVTYYLLLDNRFRVPSGYLESEFQE 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,003
Number of Sequences: 28952
Number of extensions: 262127
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)