Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060248.seq
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   5.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -2

Query: 427 ACDRNDXCMAMRGDHIAPSEREVPCRPTFVRPSCPG 320
           AC  N  C+   G        E  C P FV P C G
Sbjct: 268 ACHNNGTCLDKVGGF------ECKCPPGFVGPRCEG 297


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 371 RWRDMVAPHRHTGVV 415
           RWRD +    H+GVV
Sbjct: 310 RWRDRIYDAIHSGVV 324


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 507 FDSKSFQGTFPAHTSRSSLNDXRALKCPY 593
           + S S  G+ P H+S S+     A   PY
Sbjct: 35  YSSSSPSGSSPQHSSSSASTSPAARMYPY 63


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 507 FDSKSFQGTFPAHTSRSSLNDXRALKCPY 593
           + S S  G+ P H+S S+     A   PY
Sbjct: 35  YSSSSPSGSSPQHSSSSASTSPAARMYPY 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,649
Number of Sequences: 336
Number of extensions: 2324
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)