Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060248.seq
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 37 0.003
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.004
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.005
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.005
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.015
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.020
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.020
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.020
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.027
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.035
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.082
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.082
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 32 0.082
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.14
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.19
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.33
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.44
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 1.0
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 28 1.0
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.3
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 2.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.1
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 7.1
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G AFV F + D ++A++T++G+ LD RE+ VQ A
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 250 RSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 251 RGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 224 TNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
GFAFV +R+ AEEA+++++G +DGR + V A
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 33.1 bits (72), Expect = 0.035
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T E+RG+ FV F DA+ A + + L GR LR+ A
Sbjct: 42 TGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
+ ++++ S+GF F++F + A AL R L+GRE+ V+
Sbjct: 528 VETEKAGAGRSKGFGFMQFISHKYALMAL-----RWLNGREITVK 567
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 378
TR SR FAFV + + RDAE+A + GR L+ G LRV+ A
Sbjct: 43 TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
TR S G+A+V F D E+ALD ++ ++ GR R+
Sbjct: 117 TRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+S+GF FV + +A +A+ M+ RML G+ L V +A
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 235 YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
++H QR S+GF ++++ A AL+ M+G L GR +RV
Sbjct: 368 FVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 253
L V N+ + T ED++ +FE G++ +++ RD
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V L R T +L FE+ G V D I RD+ G+
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSSVVMLKK 319
V NL++ T +DL F CG++ I +P D G+++ FS + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S GF FV F ++ A A+ M+G +LDG +L ++++
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 250 RSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ + R +RGFAF F R+A A+ + L GR L +Q A
Sbjct: 754 KKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 167 NLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
NLTY +DL+ +F G++ +++P D+
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T+ SRGF F+ F +A A+D ++ + GR L VQ A
Sbjct: 138 TKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.027
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 125 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
P R DG + + L + TT + LR FE+ GEV D + RD T G+
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
D V L V NL ++ E L+ F+R G+V + IP D+T G+
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGR 131
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.082
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
S+ V N+ Y TPE+L+ F CG V + I D+ G
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTG 93
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.082
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF F F DAE A+ +DG+ G +L Q A
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 31.9 bits (69), Expect = 0.082
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
+T+ GF FV +FE +DA ++L + LD R +R +
Sbjct: 68 FTKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T +S G+AFV F RD + A G ML+GR + V +
Sbjct: 137 TGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDV 175
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 357
Y +E G VRF +AE + M GR DGR
Sbjct: 292 YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +GFA+++F + ++AL + +M +GR LR+ A
Sbjct: 307 TNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDG 339
RF ++R YL + T ++GFAFV +++R A +A D +DG
Sbjct: 224 RFGGIQRV--YLAKDKE-TGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T +S+GFAF+++ ++R A+D M L R +RV
Sbjct: 68 TGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 375
S+G A + F DA A + +GR++DG R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 170 DYLLLTRPCHRFVAEVFRNSF*IV*IFSSNQTNLII 63
D++ +T P H FV + RNS + + S+N +N+I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 292 FFERRDAEEALDTMDGRMLDGRELRV 369
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 283 FVRFFERRDAEEALDTMDGRMLDGRELR 366
++ + + DA A+ +DG + DGR LR
Sbjct: 169 YITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+ FV F + A A DT++G M+ + + V A
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 365 RSSLPSNIRPSIVXXXXXXXXXSKNLTKANPLLSLVYDLWEC 240
R+ +PSN P + K +TK N L D++EC
Sbjct: 39 RNDIPSNFFPQLFITDNGFAAIKKAVTKLNFQSLLSLDIFEC 80
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T + RG A V FF+ A A+ + + G+E+++Q A
Sbjct: 42 TPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYA 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,181
Number of Sequences: 5004
Number of extensions: 42392
Number of successful extensions: 144
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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