Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060248.seq
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 9e-19
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 41 8e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 41 0.001
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.002
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 37 0.016
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 37 0.016
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.028
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.038
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 35 0.050
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 35 0.050
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.087
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.087
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 33 0.26
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 0.81
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.81
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.81
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.1
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.1
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 30 1.4
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 2.5
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 3.3
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 3.3
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 29 3.3
SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085) 29 3.3
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 3.3
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 3.3
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 4.3
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 5.7
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 90.6 bits (215), Expect = 9e-19
Identities = 46/91 (50%), Positives = 54/91 (59%)
Frame = +2
Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDSPS*GFSS 301
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR + F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 302 VVMLKKPWTRWTDECWTAGNFAFRWRDMVAP 394
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T+ RGFAFV F +++ E+A++ +DG+ DGR ++V A
Sbjct: 266 TQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQA 305
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGF FV F + ++A+D DG LDGR ++V A
Sbjct: 46 TGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKA 85
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R GFAF F +RRDAE+A+ +DGR + G+ +RV++A
Sbjct: 65 RNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R GFAF F +RRDAE+A+ +DGR + G+ RV++A
Sbjct: 35 RNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA 73
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
SRGFA+V + + + E+AL MDG +DG+E+ VQ
Sbjct: 1197 SRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ 1231
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGF FV F + + E+A+D DG+ LDGR ++V A
Sbjct: 133 TGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGF FV F + + E+A+D DG+ DGR ++V A
Sbjct: 41 TGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQA 80
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R GFAFV + + RDAEEA+ +DG + R +RV+ +
Sbjct: 37 RNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+T +S+GFAF+ F R DA A++ + G D L V+ A
Sbjct: 217 FTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWA 257
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
TRESRG AF+ F +R+ A+ A+ ++ + + GR ++ +A
Sbjct: 47 TRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIA 86
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
V NL Y T DL +VFER G+V + I RD+
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
FAFV F + RDAE+A+ DG DG +RV+
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVE 333
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
ESRGF FV + + A++ L M G +DGR++R+ A
Sbjct: 325 ESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 253 SYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
S T S+G+ FV+F E A+ A++ M+G L GR L++
Sbjct: 277 SETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 241 HSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ Q R+ R + FV F +R A +A+D ++G +DG +L V +A
Sbjct: 25 YGQIEKVRKIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLA 70
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
RG+ FV F + RDAE+A+ ++GR L G + V+ +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFS 757
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
SRGF FV F DA+ A+ +++G+ + GR L++
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T + RGF FV F D A+D M+ L GR +RV +A
Sbjct: 42 TSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 363
+S+GF FV F +AEEA++ ++G+ + GR L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV F +A +A+ M+GR+L + L V +A
Sbjct: 251 SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALA 287
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+S+GF FV F R DA +A+ MD + G++++ A
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWA 589
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 253 SYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
S + RG+AF+ + RD A DG+ +DGR + V +
Sbjct: 41 SKASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDV 81
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
++ + +AFV F ER A +A++ DG+ +DG ++ +A
Sbjct: 359 KKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLA 397
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 247 QRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+R SRGF FV + D E+ DG +GR L+V A
Sbjct: 75 EREQPERSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDT---MDGRMLDGR 357
TR SRGF FVRF + DA+ L T + GR+ + R
Sbjct: 152 TRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVR 187
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 250
RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 190 RPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
SRGFAFV + +AE+ +GR ++G +RV
Sbjct: 246 SRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
E RG FVRF +R +A+ A+D ++ + L G +++
Sbjct: 151 EGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +S G+AFV + DA +A+ M+G L + L+V A
Sbjct: 64 TGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
D S+ + NL + E LR +F CG V + + RDR G
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTG 94
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 253 SYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S T S+GFAF+ F ++ A++ M+G+ L R + V A
Sbjct: 136 SDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDI 238
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
+L VDNL+ T D+ R F G+V ++I DR GK
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGK 358
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
GF FV F +A +A + ++G ++DGR++ V +
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 149 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 256
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+GFAFV + A+ AL+ M+G +L GR ++V
Sbjct: 143 KGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
D + L V L+Y TT E L+ F + GE+ + I D G+
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGR 68
>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = -2
Query: 523 KLFESKRERLREXXXXXXXASNYDGGNETWTCACD---RNDXCMAMRGDHIAPSEREVPC 353
K ++K E + YDG T D ND + M G H AP R++ C
Sbjct: 310 KYNKAKEELSKSRGKSHPFDEQYDGDRNTQIALMDMPHENDVVVEMNGRHAAPRHRKIRC 369
Query: 352 R 350
+
Sbjct: 370 Q 370
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
++S+G V+F +A A++ + G+ML R LRV+M
Sbjct: 222 KKSKGMGTVQFETPMEAMNAVNLLHGKMLMDRALRVRM 259
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ + +GF F+R R AE A +D GR LRV+ A
Sbjct: 82 FINKEKGFGFIRLDTRLHAEAAKAGLDMATRKGRTLRVRFA 122
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T + +G+ F + ++ A A+ ++G L+GR LRV A
Sbjct: 62 TGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSA 101
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 250
+L V N+ TT DL+ FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGR 342
T+E+RG +V+F + A A + MDGR
Sbjct: 60 TKENRGVCYVKFVKASSAALACEEMDGR 87
>SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)
Length = 292
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGR-MLDGRELRVQMA 378
+AFV+F+ + A A + ++G+ ++DG L+VQ A
Sbjct: 80 YAFVKFYSAKAALRAKEEVNGKWLIDGNILKVQFA 114
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 244 SQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
S+ + S+G+AFV F A+ A DTM M+ GR L+
Sbjct: 130 SRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 424 CDRNDXCMAMRGDHIAPSEREVP--CRPTFVRPSCP 323
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
++ +G + F +RD + AL +DG L+G+ +R+
Sbjct: 130 KQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 241 HSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
H +R ++R FV F A++A+D M+G + +RV MA
Sbjct: 133 HVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMA 178
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
S GF FV + DA++A+D ++G + + L+V
Sbjct: 87 SYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKV 120
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
F FV+F + A+EA+ GR+++G+++ V++
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,503,155
Number of Sequences: 59808
Number of extensions: 315134
Number of successful extensions: 739
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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