Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060248.seq
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 71 9e-13
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 71 9e-13
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 0.001
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 40 0.001
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 40 0.001
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 39 0.003
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 39 0.003
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.005
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.005
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 38 0.005
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 38 0.005
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.006
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.008
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.008
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 38 0.008
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.008
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 37 0.014
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 36 0.025
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 36 0.025
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 36 0.025
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.025
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.033
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.033
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 36 0.033
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 35 0.043
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.13
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 32 0.30
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 32 0.30
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.53
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.53
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 31 0.93
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.2
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 30 1.2
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 1.6
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 1.6
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 1.6
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 30 1.6
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 30 1.6
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 30 1.6
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 1.6
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 2.8
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 2.8
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 2.8
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 29 3.8
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 3.8
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 3.8
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.8
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 6.6
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 6.6
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 6.6
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical... 28 6.6
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 6.6
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 6.6
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.6
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 27 8.7
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 27 8.7
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 70.5 bits (165), Expect = 9e-13
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = +2
Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +1
Query: 178 PNDA*RLTPRFRKVRRSW*YLHSQRS-YTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354
PND R R+ + +H R Y+R+S+GF FVRF+ERRDAE ALD DG+++DG
Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
Query: 355 RELRVQMA 378
RELRV +A
Sbjct: 88 RELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 70.5 bits (165), Expect = 9e-13
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = +2
Query: 122 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK 54
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +1
Query: 178 PNDA*RLTPRFRKVRRSW*YLHSQRS-YTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354
PND R R+ + +H R Y+R+S+GF FVRF+ERRDAE ALD DG+++DG
Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
Query: 355 RELRVQMA 378
RELRV +A
Sbjct: 88 RELRVTLA 95
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGFAF+ F E A+ A++ M+G +GR LRV +A
Sbjct: 42 TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+GFAF+R R AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+GFAF+R R AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGFAFV F E A+ A+D +G +GR LRV +A
Sbjct: 41 TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 94 SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV F + +A A+ M+ +M+ + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 94 SRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV F + +A A+ M+ +M+ + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGFAFV F E A+ A++ ++G +GR LRV A
Sbjct: 43 TGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 69 TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 69 TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 69 TRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 378
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S GF FV+F+ DA+ AL M G +LDG L ++++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 167 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
NL Y T +DL+ +F++ GEV ++ + D+ G
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTG 317
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 256 YTRES--RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
YT+E RGFAFV F + A AL + + ++L V+
Sbjct: 36 YTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLTVE 76
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 205 RFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T + +G+ FV + R DAE A+D M+G L R +R A
Sbjct: 169 TNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 59 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 98
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 69 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 172 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+AFV F + A +AL TM+ R+L RE++V A
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 140 TTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R S+GF FV +DAE A + G M++GR++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 244
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R S+GF FV +DAE A + G M++GR++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 140 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 244
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 196 LTPRFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQ 372
L P F K + W + SRG+AFV + + DA A T DG + G+ L+V
Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
Query: 373 MA 378
++
Sbjct: 276 VS 277
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
++ + +AF+ F ER D +A++ +G+ L+G + +A
Sbjct: 407 KKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLA 445
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
L R + RG+ +V + DAE+++ MDG +DG + V+M
Sbjct: 164 LPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T++S+G+ FV F +++AE A+ M+G+ + R +R A
Sbjct: 172 TQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 211
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
RGF FV F DA A+D M+ L G+ +RV A
Sbjct: 52 RGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 247 QRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
+ S T +S+G+ FV F + D A+ MDG+ + R ++++
Sbjct: 236 RESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLR 277
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
GF FV ++ R DAE AL + +D R +R
Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIR 109
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 141 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +GF FV F DA+ A+ ++ L G+ ++V A
Sbjct: 50 TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 89
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 151 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +GF FV F DA+ A+ ++ L G+ ++V A
Sbjct: 60 TANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 99
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
S+ V N+ +++T ++ F CG+V + IP+D+ G
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTG 84
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGREL 363
GF FV F ++RDA++A+ ++G+ L G +
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERV 65
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 18 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265
TT EDL +F R G++ + I RDR G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF F+ F DA A D + LDG ++RV +
Sbjct: 116 SRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
L V NL+ TT +DLR VF GE+ + DR G
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSG 114
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265
TT EDL +F R G++ + I RDR G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 182 TTPEDLRRVFERCGEVGDIYIPRDRTQG 265
TT EDL +F R G++ + I RDR G
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSG 210
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 465 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 375
T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 92 TQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 536 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 164 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 309 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
S+ + N+ + +T E++ F+ CG++ IP+D+
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDK 90
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T +S+GFAF+ + ++R A+D +G L R +RV
Sbjct: 75 TGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
+ L+Y + D+ VF + GEV +I + RD+ GK
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
RG+AF+ + ++ + A DG +DG+ L V
Sbjct: 144 RGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVV 176
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 92 ISILFKMSYGRPPPRIDGMVSLKVDNL 172
I ++F ++ G PPP IDG + + +D L
Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264
>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
protein Y67D8C.9 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 241 HSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 354
H RS+ ++ + A VR+ R AE+ D + DG
Sbjct: 604 HEYRSFLKDRKASASVRYRGSRSAEDGSTLFDDALFDG 641
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDG 354
S+G FVRF ++ +A+ A+ T++G + G
Sbjct: 168 SKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 372 TNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,645
Number of Sequences: 27780
Number of extensions: 238281
Number of successful extensions: 622
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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