Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060248.seq
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 51 8e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 51 8e-07
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 44 9e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 5e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 5e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 42 5e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 41 8e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 41 8e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 41 8e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 8e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.002
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 40 0.002
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 40 0.002
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 40 0.002
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.002
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.003
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.003
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 39 0.003
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 38 0.004
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.006
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.006
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.006
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.006
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.008
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.008
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.010
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 37 0.010
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 37 0.013
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 37 0.013
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 37 0.013
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.013
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.013
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.013
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.018
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 36 0.023
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.023
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.023
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.023
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.023
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.031
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.031
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.031
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.031
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.041
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.041
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 35 0.041
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 35 0.041
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.041
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.041
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.041
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.054
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.054
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.054
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.054
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.071
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 34 0.071
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.071
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 34 0.071
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 34 0.094
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.094
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.094
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 34 0.094
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.12
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.12
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.16
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.16
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.16
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.16
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.16
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.22
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.22
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 32 0.29
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 32 0.29
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 32 0.29
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.38
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.38
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.38
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 32 0.38
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 32 0.38
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 31 0.50
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.50
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.50
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.50
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.50
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.50
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.66
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.66
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.66
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.66
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.66
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.66
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.66
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 31 0.87
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 1.2
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 30 1.2
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 1.2
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 1.2
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 1.2
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.2
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.2
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 1.2
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.5
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.5
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 30 1.5
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.5
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.5
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 2.0
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 2.0
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.0
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.0
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 29 2.0
At1g30680.1 68414.m03751 toprim domain-containing protein contai... 29 2.0
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 2.0
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 2.7
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.7
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 2.7
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 2.7
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 3.5
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 4.7
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 28 4.7
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 6.1
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 6.1
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 6.1
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 28 6.1
At3g50180.1 68416.m05486 hypothetical protein 28 6.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 6.1
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 6.1
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 28 6.1
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 28 6.1
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 8.1
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 8.1
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 8.1
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 27 8.1
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 8.1
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 27 8.1
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 27 8.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 8.1
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 116 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A
Sbjct: 53 TGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 116 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/40 (52%), Positives = 32/40 (80%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A
Sbjct: 53 TGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+TR+SRG AFV + R DA +A +MD ++L+GR+L V +A
Sbjct: 93 HTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
YT + RGF F++F + DA EA MDG +L GREL V A
Sbjct: 73 YTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
SL V NL + EDLRR FE+ G V DIY+PRD G
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
YT + RGF FV+F + DA +A MDG +L GREL V A
Sbjct: 72 YTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
SL V NL + EDLR+ FE+ G V DIY+PRD G
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
YT SRGF FV + +AE A+ MDG+ L+GR + V++
Sbjct: 39 YTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
SL V N+ PE+LR FER G V D+YIPRD G+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ 86
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
Y+ + RGFAFV F + DA EA +M+ R GRE+ V +A
Sbjct: 83 YSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV F E DA A D MDG+ L GR LR+ A
Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
++ R F FV F ER DA A+D MDG L GR L V A
Sbjct: 51 QKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 253 SYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S T+ +GF F+ F DA +AL ++DG+++DGR + V++A
Sbjct: 42 SETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 72 TGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 72 TGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
YT E RGF FV++ DA EA+ M+ +++ GRE+ + A
Sbjct: 83 YTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 123
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 143 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
G L + NL P DLR FER G + DIY+PR+ G+
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 72 TGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 72 TGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F ++DA+ A++ M+G+ L R++R A
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 202 PRFRKVRRSW*YLHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
P +++ S + S + ++ + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 73 PLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRG+ FV + + + E AL+++DG L+GR +RV +A
Sbjct: 214 TGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +SRGFAFV D +D +DG GR L+V A
Sbjct: 122 TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ S+G+AF++F + DA A++TMD RM +GR + + +A
Sbjct: 78 KRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIA 116
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
++ SRGF F+ F E++ +EA+ M+G LDGR + V A
Sbjct: 43 FSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F ++DA+ A+D + G+ L R++R A
Sbjct: 176 TGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+E + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 88 KEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV + + EA+ +DG+ L+GR +RV +A
Sbjct: 281 TGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +SRGF FV +AE A++ + L+GR L V A
Sbjct: 187 TDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 189 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ S + ++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ S + ++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
TR+S G+ +V F + DA+ A++ M+G+ DGR + V+
Sbjct: 114 TRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF F+ F + + AL TM+G ++GR LR+ +A
Sbjct: 256 TGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T SRGF FV +A+EA+ + + GR ++V
Sbjct: 153 TDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 45 TGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 45 TGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V NLT+RTT +DLRR FE+ G+V D + + G+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV + ++ + A+ ++DG LDGR++RV A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T SRGF FV + E A +G LDGR LRV
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F A A+ +DGR L GR ++V A
Sbjct: 77 TGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 250 TGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 277 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+ FV F RDAE+A+ DG LDG LRV++A
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGFAFV F +A A+ +DG+ L GR +RV A
Sbjct: 71 TGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 131 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
P+ + +L V L+ RTT E LR F + GEV D + DR G
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDG 354
S+GF FVR+ D+ + + MDG+ LDG
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDGKFLDG 124
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF FV+ + A+ +DG+ L+GR ++V +A
Sbjct: 244 TGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +SRGF FV +AE+A++ + ++GR L V A
Sbjct: 150 TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
T SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 211 TSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T SRGF FV + E A +G +GR LRV
Sbjct: 136 TGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T SRGF FV + E A +G +GR LRV
Sbjct: 136 TGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
T S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 81 TGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/40 (35%), Positives = 27/40 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T+ +GF F+ F DA++AL ++G++++GR + V+ A
Sbjct: 103 TQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T S+ F FV + + A+ A+D M+GR L G++L+VQ+
Sbjct: 386 TGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +S GF FV F D E A+ ++ +L+G+++RV A
Sbjct: 214 TSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
Y+ SR F F DA ++ ++G ++GRE++V +
Sbjct: 112 YSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+TRESRGF F+ DA + ++D +L GR + V+ A
Sbjct: 111 WTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 253 SYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S T S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 238 SNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 44 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
E RGFAFV+F + D A++ +G + GR + V+ A
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQG 265
L + NL ++ P D++ VF G V D++IP++ G
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETG 369
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+GFAFV+F ++DA A+ +G M R + V A
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 131 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 259
P G L V NL + +DLR+VFE G V + +PRD T
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDET 321
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 49 TGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 49 TGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 378
+T SRGFAFV F+ DA +AL+ + L+ G+ LRV A
Sbjct: 494 FTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYA 536
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.7 bits (76), Expect = 0.054
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
T + +G+AF+ + RD + A DG+ +DGR + V +
Sbjct: 175 TNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+GFAF+R+ +A +A+ M G+ LDGR + V+ A
Sbjct: 118 KGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 95 SILFKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
S L S PP G L V L++RTT + LR FE+ G + + + D+ +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANR 116
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 253 SYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S T S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 249 SNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 250 RSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
+ + ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 50 KDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 256 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
+TRESRGF F+ DA + ++D +L GR + V+
Sbjct: 81 WTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRG+ FV F A A+ M+G+ L+G + V +A
Sbjct: 68 TGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 253
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 194 DLRRVFERCGEVGDIYIPRD 253
D R FER GE+ D+Y+P+D
Sbjct: 106 DFRSHFERYGEITDLYMPKD 125
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 140 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ G+
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 283 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
FV FF+ RDA +AL M+G+++ G+ + +Q +
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFS 254
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 44 TGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 107 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
K S G P +DG + + NL + TT D+R++F C + + + +++ G+
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGE 300
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 113 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 274
+Y PP ++ V NL T E+L++ F + GEV + IP + G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 154 TGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 357
TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 109 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 357
TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 108 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 379 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 370 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 360
+S+GF FV F DA A+D ++G+ D +E
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRG FV F +A A+ M+G+M+ + L V +A
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV F +A++AL +G+ L+GR + V A
Sbjct: 74 SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T +S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 73 TGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V + + T DL VF + GE+ D+ + RD+ GK
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 244 SQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 372
S+ T ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 140 SRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
S+ V N+ Y TPE++++ F+ CG V + I D+
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 138
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGR 357
+GFA+V F + +AE+AL ++ +++DGR
Sbjct: 62 KGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 113 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
SY R P + V L + T +++RR FE+ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 113 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
SY R P + V L + T +++RR FE+ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R +AFV F DA A++++ G L G LR++ A
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFA 93
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 283 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
FV F++ RDA A D M+G+ + G+++ ++ +
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+S+GF FV F +A +A+ T G+M G+ L V +A
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
R RG+AFV F DA A +T++G + L V A
Sbjct: 238 RLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV + +A AL M+G+M+ + L + +A
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 31.1 bits (67), Expect = 0.66
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 161 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+S+GF FV F DA A+++++G D +E V A
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 104
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G FV F +A EA+ + G+M++ + L V +A
Sbjct: 171 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYI---PRDRTQGKV 271
L N+ + +TPED+R +FE+ G V DI + ++R +G V
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLV 137
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G FV F +A L+ M+G+M+ G+ L V +A
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 150 TGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRM 345
TR+S G+ +V F + DA+ A++ M+G++
Sbjct: 95 TRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
S+ V N+ Y TPE++++ F+ CG V + I D+
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDK 127
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 130 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 163
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 192 TGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
S+ V N+ Y TPE+++ F+ CG V + I D+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 256
S+ V N+ Y TPE+++ F+ CG V + I D+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +1
Query: 271 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+G+ + F +A++AL+ M+G++L GR++R+ +A
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLA 458
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 191 EDLRRVFERCGEVGDIYIPRDRTQG 265
++LR F +CGEV +++P DR G
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETG 521
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
++RGFAFV +A+ A+D D + GR + V A
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV + +A A+ M+G+M+ + L V +A
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 113 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
SY R P + V L + T +++RR F++ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV F +A++A++++ G L ++L V A
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+GF FV F ++++A ++G ++DG+ + V++A
Sbjct: 343 SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 237 TGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 235 TGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 235 TGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+SR F FV F + A A++ M+G ++D +EL V A
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
S+G FV F +A +A+ M+G+M+ + + V +A
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 372
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 372
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 372
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVE 70
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 351
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 351
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDG 354
S+GF FV + DAE+A M+ + LDG
Sbjct: 74 SKGFGFVTYATIEDAEKAKAEMNAKFLDG 102
>At1g30680.1 68414.m03751 toprim domain-containing protein contains
Pfam profile: PF01751 toprim domain
Length = 709
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 221 GEVGDIYIPRDRTQGKVEDSP 283
G++GD Y+ DRT G DSP
Sbjct: 675 GQIGDAYLCYDRTTGSYSDSP 695
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 268 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
SRGF FV + A A+ M + LDGR + V A
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
T S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 211 TGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 194 DLRRVFERCGEVGDIYIPRDR 256
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 104 FKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
F+M G + + V L + T + +RR FE+ GE+ + + D+ G+
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVE 274
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR G V+
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVK 136
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
++ S+G+AF+ + A AL M+G++++G + V +A
Sbjct: 319 SKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVA 358
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGR 342
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDPRDARDAIRALDGK 61
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 119 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGKVEDS 280
G PP + G+VSLK +L+ ++ + F G + I + R+ G++ ++
Sbjct: 279 GHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEA 332
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 197 LRRVFERCGEVGDIYIPRD 253
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 197 LRRVFERCGEVGDIYIPRDRTQG 265
L + F+ CGE+ +Y+P D +G
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERG 155
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
+S+G+AFV F + A++A++ + + G+ +R ++
Sbjct: 155 DSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 152 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 247
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 274 GFAFVRFFERRDAEEALDTMD 336
G+AFV F + RDAE+A+ +D
Sbjct: 36 GYAFVYFEDERDAEDAIRKLD 56
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 265 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 366
+ +G+AFV F + A EA+DT++ G+ ++
Sbjct: 131 DGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At3g50180.1 68416.m05486 hypothetical protein
Length = 588
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 325 PGLLQHHDARKTLRRRILYFPLCTISGNVDITNFSAPFEN 206
PGLL H D K+L ++ F C I + DIT++ +N
Sbjct: 437 PGLLIH-DGTKSLFLNLIAFEQCHIESSNDITSYIIFMDN 475
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 369
T++S+G AF+RF A+ A+ + M++G++ V
Sbjct: 251 TKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGV 287
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 262 RESRGFAFVRFFERRDAEEALDTMDGR 342
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDSRDARDAIREVDGK 61
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +++GF FV F R+ A+EAL R+L+ R Q+A
Sbjct: 141 TGKAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLA 179
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T +++GF FV F R+ A+EAL R+L+ R Q+A
Sbjct: 141 TGKAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLA 179
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 119 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 259
GR I+ L + NL Y ED++ +F GE+ + DR+
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 122
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 119 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 259
GR I+ L + NL Y ED++ +F GE+ + DR+
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 58
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 119 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRT 259
GR I+ L + NL Y ED++ +F GE+ + DR+
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS 124
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 259 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 378
T+ S+GF FV F E A A + +DGR + ++A
Sbjct: 46 TQRSKGFGFVTFREVESATRACEN-PNHTIDGRTVNCKLA 84
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 197 LRRVFERCGEVGDIYIPRDRTQG 265
L + F CG++ IY+PRD +G
Sbjct: 227 LEKHFASCGKITHIYVPRDFERG 249
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
L + +++ T E L+ F GEV + I +DRT G+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 155 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRTQGK 268
L + +++ T E L+ F GEV + I +DRT G+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGR 45
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 238 LHSQRSYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 375
L ++ T++ +GF F F A+ + R +DG+EL V +
Sbjct: 233 LRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNV 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,468
Number of Sequences: 28952
Number of extensions: 225621
Number of successful extensions: 831
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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