Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060247.seq
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    38   0.002
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    26   5.9  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   7.8  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +1

Query: 328 SGISMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHN 471
           S +++K+    ++ LRKE F LKL+ YFL ++L       VQ +++ N
Sbjct: 247 SSLTLKEQANVIDNLRKEVFGLKLKCYFLYDQLNKFHDQEVQDIMKQN 294


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -2

Query: 212 FYSIFALVLKDADEKNY*QLFLLLSFIDVTVLIWD*LYLFCILENYFSLIMCQET 48
           +Y+I+ L++   D  N  Q   L     +T+ +   L+  C++  + SL+M + +
Sbjct: 12  YYTIWVLIMPFVDNMNISQKLFLDREWAITIPVAVMLFGICLIGTFVSLLMIKSS 66


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 343 KQYEEQLNGLRKENFHLKLRIYFLEEKLGNGS 438
           KQY++ +  L+KEN  L  ++  L+ +L N +
Sbjct: 77  KQYQDTIGKLQKENNELLEQLEMLQAQLKNST 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,481
Number of Sequences: 5004
Number of extensions: 44030
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)