Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060247.seq
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4013| Best HMM Match : Spindle_assoc (HMM E-Value=4.7e-15)          54   1e-07
SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_2340| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         29   4.7  
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)                     28   6.2  
SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)                  28   6.2  
SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)                  28   8.2  

>SB_4013| Best HMM Match : Spindle_assoc (HMM E-Value=4.7e-15)
          Length = 134

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 30/66 (45%), Positives = 37/66 (56%)
 Frame = +1

Query: 337 SMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNXXXXXXXXXXXXXXT 516
           +MK YE Q++ L+KENF LKLRIYFLEE+L N   P    L + N               
Sbjct: 67  TMKDYEFQISELKKENFGLKLRIYFLEERLANDDTP--DDLFKANIELKVTVEKQKKELV 124

Query: 517 DKQELL 534
           +KQELL
Sbjct: 125 EKQELL 130


>SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +1

Query: 283 EMAMPSTEGHDVTNI----SGISMKQYEEQLNGLRKENFHLKLRIYFLEEK 423
           +  MP T    + NI     G+S K  E  +  L+KENF LKLR+Y +E+K
Sbjct: 96  DFIMPRTSADQLENIRTPTGGMSFKDQETLIQELKKENFDLKLRLY-MEQK 145


>SB_2340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 343 KQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLE 465
           K   E   G R  NF  K + +++ + LGNG+P A +GL E
Sbjct: 25  KNCGEVHKGKRVINFEQK-KTWYMSDSLGNGTPTACRGLCE 64


>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 313 DVTNISGISMKQYEEQLNGLRKEN 384
           ++T+++ IS KQY EQ+N L+ ++
Sbjct: 508 NITDVNSISKKQYTEQVNDLKPDD 531


>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
          Length = 1312

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 289  AMPSTEGHDVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEKL 426
            ++P     D+     +  KQY+EQLN L + N  L+ R   LE ++
Sbjct: 1004 SIPVVSDLDIQAPGLLGQKQYQEQLNLLEQRNLTLQARNERLEREV 1049


>SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)
          Length = 363

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 289 AMPSTEGHDVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEKL 426
           ++P     D+     +  KQY+EQLN L + N  L+ R   LE ++
Sbjct: 284 SIPVVSDLDIQAPGLLGQKQYQEQLNLLEQRNLTLQARNERLEREV 329


>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
          Length = 800

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 KQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQ 453
           + YE  ++ LRKE   LK R+   EEK    SP  VQ
Sbjct: 291 RDYENCISQLRKELKELKERLEKAEEKSSKPSPLLVQ 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,409,964
Number of Sequences: 59808
Number of extensions: 327847
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)