Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060247.seq
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   3.1  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    28   7.2  

>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -1

Query: 153 VFIIVFY*CHRAYLGLIVFILYTRKLFLFNNVSRN-----KSLYLIHYLITTNLVP 1
           V++I+F     AYL + + I++  +LF+    ++N       +YLIHY+I   ++P
Sbjct: 101 VYMIIFM---GAYLLVAISIVFENRLFVLVMTNKNLHRYATPIYLIHYIIPLIVIP 153


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
           protein Y51A2D.15 protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 337 SMKQYEEQLNGLRKENFHLKLRIYFLEEKL 426
           S+ + ++++  L +EN H K +++ L+EKL
Sbjct: 766 SLNESDDRVRELTRENMHTKEQVFMLQEKL 795


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
 Frame = +1

Query: 274  KLQEMAMPSTEGHDVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEK---LGNGSPP 444
            +++++ + + E   VT+++ ++     ++++ L +ENF LK R+Y +E K   + N S  
Sbjct: 1220 RIRKLKLNTKEPLSVTDLTELTC----QRVHDLMQENFLLKSRVYDIETKIDHISNSSDE 1275

Query: 445  AVQ 453
             VQ
Sbjct: 1276 VVQ 1278


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
 Frame = +1

Query: 274  KLQEMAMPSTEGHDVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEK---LGNGSPP 444
            +++++ + + E   VT+++ ++     ++++ L +ENF LK R+Y +E K   + N S  
Sbjct: 936  RIRKLKLNTKEPLSVTDLTELTC----QRVHDLMQENFLLKSRVYDIETKIDHISNSSDE 991

Query: 445  AVQ 453
             VQ
Sbjct: 992  VVQ 994


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,670
Number of Sequences: 27780
Number of extensions: 256039
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)