Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060247.seq
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06850.1 68414.m00730 bZIP transcription factor, putative con...    28   5.1  
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h...    27   8.9  
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    27   8.9  

>At1g06850.1 68414.m00730 bZIP transcription factor, putative
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 337

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 313 DVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEK 423
           + T +S   +  Y+   NGL  EN  LKLR+  +E++
Sbjct: 186 EATTLSA-QLTLYQRDTNGLANENTELKLRLQAMEQQ 221


>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
           heavy chain-like protein, potato, PIR:T07397
          Length = 625

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 313 DVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEK 423
           DV  +      Q E+ ++ L +E F LKL++  L+EK
Sbjct: 29  DVNVVPEHESNQLEKSISNLEEEVFELKLKLKSLDEK 65


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 310 HDVTNISGISMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQ 453
           HD+        + Y+  + GL K N  L   ++FLEE  G G  P+++
Sbjct: 662 HDLREQGKTKKRLYQVMIVGLCKAN-KLDDAMHFLEEMKGEGLQPSIE 708


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,166
Number of Sequences: 28952
Number of extensions: 226419
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)