Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P22087 Cluster: rRNA 2'-O-methyltransferase fibrillarin...    73   6e-12
UniRef50_Q6AT27 Cluster: Putative fibrillarin protein; n=2; Oryz...    66   5e-10
UniRef50_UPI0000DD7D0A Cluster: PREDICTED: similar to fibrillari...    62   1e-08
UniRef50_Q2PET2 Cluster: Putative fibrillarin homolog; n=1; Trif...    50   4e-05
UniRef50_Q5A0V8 Cluster: Putative uncharacterized protein; n=1; ...    42   0.009
UniRef50_A5AT06 Cluster: Putative uncharacterized protein; n=1; ...    41   0.029
UniRef50_Q9VG21 Cluster: CG10909-PA; n=2; Sophophora|Rep: CG1090...    37   0.35 
UniRef50_Q4QDL1 Cluster: Fibrillarin, putative; n=3; Leishmania|...    35   1.4  
UniRef50_Q3LWE7 Cluster: Nucleolar protein fibrillarin; n=1; Big...    34   3.3  
UniRef50_Q74N89 Cluster: Fibrillarin-like rRNA/tRNA 2'-O-methylt...    34   3.3  

>UniRef50_P22087 Cluster: rRNA 2'-O-methyltransferase fibrillarin;
           n=162; cellular organisms|Rep: rRNA
           2'-O-methyltransferase fibrillarin - Homo sapiens
           (Human)
          Length = 321

 Score = 72.9 bits (171), Expect = 6e-12
 Identities = 31/42 (73%), Positives = 35/42 (83%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISV 504
           K V++EPHRH GVFI  GKEDALV KNLVPG  VYGEKR+S+
Sbjct: 84  KNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI 125


>UniRef50_Q6AT27 Cluster: Putative fibrillarin protein; n=2; Oryza
           sativa|Rep: Putative fibrillarin protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 351

 Score = 66.5 bits (155), Expect = 5e-10
 Identities = 28/44 (63%), Positives = 35/44 (79%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +V++ PH+H GVFIA  KEDAL  KN+VPG  VYGEKRISV+ +
Sbjct: 70  KVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 113


>UniRef50_UPI0000DD7D0A Cluster: PREDICTED: similar to fibrillarin;
           n=6; Eutheria|Rep: PREDICTED: similar to fibrillarin -
           Homo sapiens
          Length = 498

 Score = 61.7 bits (143), Expect = 1e-08
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = +1

Query: 385 VIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETKVIKWXTESGIPXQNR 558
           V +EPHRH GVFI  G EDALV  N+VPG  VYGE+R++V    +K    +  P +++
Sbjct: 262 VSVEPHRHEGVFIYRGAEDALVTLNMVPGQSVYGERRVTVTEGGVKQEYRTWNPFRSK 319


>UniRef50_Q2PET2 Cluster: Putative fibrillarin homolog; n=1;
           Trifolium pratense|Rep: Putative fibrillarin homolog -
           Trifolium pratense (Red clover)
          Length = 475

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 22/45 (48%), Positives = 31/45 (68%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +QV++ PHR  G F A GK++ L  +NLVPG  +YGEK I V+ +
Sbjct: 237 EQVMVVPHRFEGFFNAKGKKNILCTRNLVPGEALYGEKLIHVQNE 281


>UniRef50_Q5A0V8 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 106

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = -1

Query: 458 FLXTNASSLPXAMNTPGCLCGSIMT 384
           FL TN SSLP AM TP CLCGS+ T
Sbjct: 2   FLVTNKSSLPSAMKTPACLCGSMTT 26


>UniRef50_A5AT06 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 516

 Score = 40.7 bits (91), Expect = 0.029
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +1

Query: 421 IAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           I+  KEDA V KN+VPG  VY EK+ISV+ +
Sbjct: 143 ISYDKEDARVTKNMVPGKAVYNEKKISVQNE 173


>UniRef50_Q9VG21 Cluster: CG10909-PA; n=2; Sophophora|Rep:
           CG10909-PA - Drosophila melanogaster (Fruit fly)
          Length = 349

 Score = 37.1 bits (82), Expect = 0.35
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 391 IEPHRHPGVFIAXGKEDA--LVXKNLVPGSQVYGEKRISVETKVIKWXTESGIPXQNR 558
           IEPHRH GV++   + DA  L+ +N    +  YGE+R+  E + ++       P Q++
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERRVISEYREMRCEFRVWSPFQSK 171


>UniRef50_Q4QDL1 Cluster: Fibrillarin, putative; n=3;
           Leishmania|Rep: Fibrillarin, putative - Leishmania major
          Length = 297

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 388 IIEPH-RHPGVFIAXGKEDALVXKNLVPGSQVYGEKRIS 501
           I  PH R  G ++  GK D L  ++LVPG  VY EKR++
Sbjct: 61  IFHPHARFNGCYLLAGK-DTLSTRSLVPGVSVYSEKRVN 98


>UniRef50_Q3LWE7 Cluster: Nucleolar protein fibrillarin; n=1;
           Bigelowiella natans|Rep: Nucleolar protein fibrillarin -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 253

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 IEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGE 489
           IE HRH  V++  G ED +   N+ PG    GE
Sbjct: 11  IETHRHANVYVIRGIEDCIATINITPGKIFCGE 43


>UniRef50_Q74N89 Cluster: Fibrillarin-like rRNA/tRNA
           2'-O-methyltransferase; n=2; Archaea|Rep:
           Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase -
           Nanoarchaeum equitans
          Length = 232

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEK 492
           K + ++PH+  GV+I  G    L+ KNLV G +VY E+
Sbjct: 5   KNIKVKPHKLEGVYI--GNNKFLLTKNLVKGQKVYTER 40


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,071,910
Number of Sequences: 1657284
Number of extensions: 4289858
Number of successful extensions: 7506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7504
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)