Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.5  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 562 IFDSEXGFQTLYXTLSPSSQLI 497
           +F+S  G+QTL  T    SQL+
Sbjct: 366 LFNSLFGYQTLLITFHIGSQLV 387


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 534  LCTPLYHLRLN*YSLFTINLXSW 466
            L  P  +L L  YS+  +N+ SW
Sbjct: 1037 LSIPSMYLLLILYSIINLNVVSW 1059


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 534  LCTPLYHLRLN*YSLFTINLXSW 466
            L  P  +L L  YS+  +N+ SW
Sbjct: 1037 LSIPSMYLLLILYSIINLNVVSW 1059


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 534  LCTPLYHLRLN*YSLFTINLXSW 466
            L  P  +L L  YS+  +N+ SW
Sbjct: 1037 LSIPSMYLLLILYSIINLNVVSW 1059


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 534  LCTPLYHLRLN*YSLFTINLXSW 466
            L  P  +L L  YS+  +N+ SW
Sbjct: 1037 LSIPSMYLLLILYSIINLNVVSW 1059


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,148
Number of Sequences: 336
Number of extensions: 1087
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)