Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    71   1e-13

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 32/43 (74%), Positives = 36/43 (83%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVET 510
           +VIIEPHRH GVFIA GKED LV +NLVPG  VY EKRISV++
Sbjct: 72  KVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDS 114



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 477 SLW*KENIS*D--EGDKVXYRVWNP 545
           S++ ++ IS D  +G KV YRVWNP
Sbjct: 103 SVYNEKRISVDSPDGTKVEYRVWNP 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,242
Number of Sequences: 5004
Number of extensions: 18771
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)