Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...    66   2e-11
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909...    66   2e-11
04_04_1522 + 34144288-34145550                                         28   5.4  

>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/44 (63%), Positives = 35/44 (79%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +V++ PH+H GVFIA  KEDAL  KN+VPG  VYGEKRISV+ +
Sbjct: 70  KVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 113


>02_05_1258 +
           35290183-35290198,35290292-35290599,35290844-35290939,
           35291067-35291144,35291224-35291400,35292738-35292806,
           35292917-35293093
          Length = 306

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/44 (63%), Positives = 35/44 (79%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +V++ PH+H GVFIA  KEDAL  KN+VPG  VYGEKRISV+ +
Sbjct: 67  KVVVVPHKHNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 110


>04_04_1522 + 34144288-34145550
          Length = 420

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +1

Query: 460 LVPGSQVYGEKRISVE---TKVIKWXTESGIPXQNRKXGSLQFIGXEXXLYHXGPLGVQE 630
           ++  S VYG+K +  E   +K  KW     +P  N     + F      L    PLG+  
Sbjct: 224 VIAASDVYGDKTLPTEVYDSKENKWSVHQMMPAANLCSSKMAFCDSRLYLETLSPLGLMM 283

Query: 631 F 633
           +
Sbjct: 284 Y 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,464,483
Number of Sequences: 37544
Number of extensions: 116288
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)