Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)                 56   2e-08

>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
          Length = 304

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = +1

Query: 412 GVFIAXGKEDALVXKNLVPGSQVYGEKRISVE 507
           GVFIA GKEDALV KNLVPG  VYGEK+ISV+
Sbjct: 83  GVFIARGKEDALVTKNLVPGETVYGEKKISVD 114



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 510 EGDKVXYRVWNP 545
           EG+K+ YRVWNP
Sbjct: 118 EGEKIEYRVWNP 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,570
Number of Sequences: 59808
Number of extensions: 134237
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)