Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA...    78   9e-15
BT001738-1|AAN71493.1|  331|Drosophila melanogaster RE72617p pro...    77   3e-14
X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin pr...    56   5e-08
BT023239-1|AAY55655.1|  349|Drosophila melanogaster IP10714p pro...    37   0.020
AE014297-1590|AAF54870.1|  349|Drosophila melanogaster CG10909-P...    37   0.020

>AE013599-3536|AAF46950.1|  344|Drosophila melanogaster CG9888-PA
           protein.
          Length = 344

 Score = 78.2 bits (184), Expect = 9e-15
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVET 510
           K V IEPHRH GVFIA GKEDALV +N VPGS+VYGEKRISVET
Sbjct: 109 KTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET 152


>BT001738-1|AAN71493.1|  331|Drosophila melanogaster RE72617p
           protein.
          Length = 331

 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVET 510
           K V IEPHRH GVFIA GKEDALV  N VPGS+VYGEKRISVET
Sbjct: 96  KTVTIEPHRHEGVFIARGKEDALVTGNFVPGSEVYGEKRISVET 139


>X05285-1|CAA28903.1|  147|Drosophila melanogaster fibrillarin
           protein.
          Length = 147

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 25/32 (78%), Positives = 26/32 (81%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGS 474
           K V IEPHRH GVFIA GKEDALV +N VPGS
Sbjct: 116 KTVTIEPHRHEGVFIARGKEDALVTRNFVPGS 147


>BT023239-1|AAY55655.1|  349|Drosophila melanogaster IP10714p
           protein.
          Length = 349

 Score = 37.1 bits (82), Expect = 0.020
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 391 IEPHRHPGVFIAXGKEDA--LVXKNLVPGSQVYGEKRISVETKVIKWXTESGIPXQNR 558
           IEPHRH GV++   + DA  L+ +N    +  YGE+R+  E + ++       P Q++
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERRVISEYREMRCEFRVWSPFQSK 171


>AE014297-1590|AAF54870.1|  349|Drosophila melanogaster CG10909-PA
           protein.
          Length = 349

 Score = 37.1 bits (82), Expect = 0.020
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 391 IEPHRHPGVFIAXGKEDA--LVXKNLVPGSQVYGEKRISVETKVIKWXTESGIPXQNR 558
           IEPHRH GV++   + DA  L+ +N    +  YGE+R+  E + ++       P Q++
Sbjct: 114 IEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERRVISEYREMRCEFRVWSPFQSK 171


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,570
Number of Sequences: 53049
Number of extensions: 193236
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)