Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    64   1e-10
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    30   1.6  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    30   1.6  
U40413-7|AAK39172.1|  321|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    28   4.9  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +1

Query: 379 KQVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVE 507
           K V++EPHR  GVFI  GKEDAL  KN+V G  VYGEKR+SV+
Sbjct: 115 KTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVD 157


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 439 DALVXKNLVPGSQVYGEKRISVETKVIKWXTESG 540
           DA V KNL P S V  E++ISV++ ++   T  G
Sbjct: 260 DACVMKNLRPTSGVTRERKISVQSDIVFAVTRDG 293


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 439 DALVXKNLVPGSQVYGEKRISVETKVIKWXTESG 540
           DA V KNL P S V  E++ISV++ ++   T  G
Sbjct: 260 DACVMKNLRPTSGVTRERKISVQSDIVFAVTRDG 293


>U40413-7|AAK39172.1|  321|Caenorhabditis elegans Hypothetical
           protein C18B2.1 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 518 ITFVSTDILFSP*TXDPGTRFL---XTNASSLPXAMNTPGCL-CGSIMTCF 378
           I+FV TD LFS  T DP  RF+         +     T  C  CG  MTCF
Sbjct: 168 ISFVKTDWLFSMITRDPIDRFVSGYVDRCVRISQKNETGQCNGCGLNMTCF 218


>Z81486-8|CAB03990.2|  338|Caenorhabditis elegans Hypothetical
           protein C53A5.10 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -3

Query: 519 YHLRLN*YSLFTINLXSWH*IFXDQRIFFAXSYEYSWMPVWFN 391
           Y L  N   +FT    SW   F D  IF   S EY+ +PV FN
Sbjct: 167 YFLIFNPPIVFTSKFHSW---FFDPLIFEGRSAEYNNIPVLFN 206


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 124 SHQFTINLTTLELPRYNFKFIKLKNASGAMPPRYLFRKS 8
           + QF  ++  L    +  KF+K K+     PPR LF +S
Sbjct: 220 AEQFKESIQHLNADEFVRKFVKTKSTGTEKPPRVLFEES 258


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 124 SHQFTINLTTLELPRYNFKFIKLKNASGAMPPRYLFRKS 8
           + QF  ++  L    +  KF+K K+     PPR LF +S
Sbjct: 237 AEQFKESIQHLNADEFVRKFVKTKSTGTEKPPRVLFEES 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,597
Number of Sequences: 27780
Number of extensions: 103137
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)