Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060246.seq
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide...    73   1e-13
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...    73   1e-13
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...    61   5e-10

>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
           identical to fibrillarin 1 GI:9965653 from [Arabidopsis
           thaliana]; C-terminus identical to SKP1 interacting
           partner 7 GI:10716959 from [Arabidopsis thaliana];
           contains Pfam domain PF01269: Fibrillarin
          Length = 308

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +VI+EPHRH GVFIA GKEDALV KNLVPG  VY EKRISV+ +
Sbjct: 68  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNE 111


>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +VI+EPHRH GVFIA GKEDALV KNLVPG  VY EKRISV+ +
Sbjct: 79  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNE 122


>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +1

Query: 382 QVIIEPHRHPGVFIAXGKEDALVXKNLVPGSQVYGEKRISVETK 513
           +V++ PHRH GVF+A  K DALV KNLVPG  +Y EKRI V+ +
Sbjct: 58  KVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNE 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,621,812
Number of Sequences: 28952
Number of extensions: 95790
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)