Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060245.seq
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.1  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   5.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   5.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   9.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   9.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 282 CDEEMTWPTTCCRPEPGTL 226
           CDE +  P  CC+  PG L
Sbjct: 94  CDEPVHRPGRCCKTCPGDL 112


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 601 SFFGGXAPMGESRSMSPRVRPQKGVFEGVVGPRAVPNL 488
           S+F G  P  + R  +   R Q  + EG+      P++
Sbjct: 117 SYFAGVNPRKQRRERTTFTRAQLDLLEGLFAKTRYPDI 154


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 632 LWLNSETGLPKLLRRSXPNGGVPQYESESPAPEGCLR 522
           L+ ++ T  P     S P+G  PQ+ S S +     R
Sbjct: 23  LFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAAR 59


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 632 LWLNSETGLPKLLRRSXPNGGVPQYESESPAPEGCLR 522
           L+ ++ T  P     S P+G  PQ+ S S +     R
Sbjct: 23  LFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAAR 59


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 538 QKGVFEGVVGPRAVPNLTFLTAKGACDMFSTPP 440
           +K  +E     +A+P +T+  +   C  ++ PP
Sbjct: 29  EKTTYEYYENNQALPPITYPPSDWNCPQYNAPP 61


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 538 QKGVFEGVVGPRAVPNLTFLTAKGACDMFSTPP 440
           +K  +E     +A+P +T+  +   C  ++ PP
Sbjct: 20  EKTTYEYYENNQALPPITYPPSDWNCPQYNAPP 52


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 620 SETGLPKLLRRSXPNGGVPQYESESPAP 537
           S + LP    R  P G +P +   SP P
Sbjct: 213 STSSLPSDFYRFSPTGLIPPHPGLSPHP 240


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 620 SETGLPKLLRRSXPNGGVPQYESESPAP 537
           S + LP    R  P G +P +   SP P
Sbjct: 105 STSSLPSDFYRFSPTGLIPPHPGLSPHP 132


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 322 SWYSSREAGARHQQTMRLWFP 384
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 322 SWYSSREAGARHQQTMRLWFP 384
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 499 VPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 401
           +P   F T   +  + S  PA+   C G N  S
Sbjct: 214 IPPAEFPTTSSSSALESPDPASRSSCLGSNTSS 246


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 206 WCLEGGRSVPGSGRQHVVGQVISSSQTDGI 295
           +C E G ++PG      V Q+I+ +  D I
Sbjct: 174 FCSEDGTTIPGDLPSKDVPQMITITFDDAI 203


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 499 VPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 401
           +P   F T   +  + S  PA+   C G N  S
Sbjct: 214 IPPAEFPTTSSSSALESPNPASRSSCLGSNTSS 246


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 499 VPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 401
           +P   F T   +  + S  PA+   C G N  S
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSCLGSNTSS 35


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 499 VPNLTFLTAKGACDMFSTPPATEILCAGQNVLS 401
           +P   F T   +  + S  PA+   C G N  S
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSCLGSNTSS 35


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 RNLHATSRGAQSWYSSR 339
           RNL+ T R  + W+ +R
Sbjct: 278 RNLNLTERQVKIWFQNR 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,813
Number of Sequences: 336
Number of extensions: 3817
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)