Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060245.seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    59   7e-10
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    29   0.64 
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   2.6  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   3.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   4.5  
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    25   7.9  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   7.9  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
 Frame = +3

Query: 111 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSSLHHKLT 290
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD +        +   
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65

Query: 291 ESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAH-KISVAGGVENMSQA 467
              R     + L   +   C+      A     +    +T    + +I VAGG E+MS A
Sbjct: 66  NPARQCALGAGLP--RSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNA 123

Query: 468 PFAVRNVRFGTALG 509
           P+     RFG   G
Sbjct: 124 PYYAPKNRFGAKYG 137



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 22/71 (30%), Positives = 40/71 (56%)
 Frame = +2

Query: 257 VGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLS 436
           +G V+S++   G    R  AL AG+P+      +N++C SG ++ +  AQ I+TG  ++ 
Sbjct: 55  MGNVVSANL--GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIV 112

Query: 437 SGGSREHVASA 469
             G  E +++A
Sbjct: 113 VAGGTESMSNA 123


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 EAGVSPAQVDSMSWAKSSLHHKLTESTRHVTRRSKLVFL 335
           E+   P+Q + +SW +   H KL +ST      SK  FL
Sbjct: 23  ESATKPSQQELISWFEEHFHKKLAQSTVSSILSSKNEFL 61


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 168 NTSATELQTIATVGALKEAGVSPAQVDSMSWAKSSLHHKLTESTRHVTRRSKLVFLKRS 344
           NTS+T+   + ++   +     P Q+DS+   K     ++ E  R  +RR    FL R+
Sbjct: 630 NTSSTQPSQVDSLVPTQLDSTIPTQIDSVQRNKDQDDEEILEERRE-SRRDSKTFLSRT 687


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 409 VLSAVHDRLE-TRAA*SVDAEHRLLLRNTSFERRVTWRVDSVSL 281
           +   V + ++ T+ + + ++   LLL N+  + +++W +D+V L
Sbjct: 185 IFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVEL 228


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 138 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
           P G  G    + + T+ Q I  +  L    V PAQ+DS+
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSI 308


>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 180 TELQTIATVGALKEAGVSPAQVDSMSWAKSSLHHKLTESTRHVTRRSK 323
           T+    +T+G +   G +   VD +   +++LH+ L E  R V  ++K
Sbjct: 88  TQWLDFSTLGMVDLVGKNILIVDEVDDTRTTLHYALRELQRDVAEQAK 135


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 184 SVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVNVELKY 47
           SV+  +R     +PN     P    P  +A+ + N ++PV+ +L +
Sbjct: 755 SVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNTSFPVDSKLAF 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,512
Number of Sequences: 5004
Number of extensions: 62807
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)