Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060245.seq
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 51 8e-07
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 50 2e-06
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 47 2e-05
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 45 7e-05
03_04_0186 + 18215475-18215993,18216248-18216262,18216607-18216894 30 1.5
12_02_0620 - 21283946-21284164,21284480-21284505,21285295-21285442 29 2.6
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430... 29 2.6
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.5
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 3.5
04_01_0298 - 3981944-3982348 29 4.6
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 28 6.1
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315... 28 8.1
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 28 8.1
07_01_0474 + 3579653-3579821,3580407-3580744 28 8.1
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 51.2 bits (117), Expect = 8e-07
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +3
Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSSLHHK 284
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V + + + L
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFG-NVLSAN 67
Query: 285 LTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRT-F*PAHKISVAGGVENMS 461
L ++ + CSA A + A ++ + I VAGG+E+MS
Sbjct: 68 LGQAPARQAALGAGI-PNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMS 126
Query: 462 QAPFAVRNVRFGTALGPTT 518
AP + R G+ G T
Sbjct: 127 NAPKYIAEARKGSRFGHDT 145
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = +2
Query: 260 GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSS 439
G V+S++ G R AAL AGIP +N++C SG ++ + +AQ IL G D+
Sbjct: 61 GNVLSANL--GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVV 118
Query: 440 GGSREHVASALRGQKREVRHGS 505
G E +++A + E R GS
Sbjct: 119 AGGMESMSNAPK-YIAEARKGS 139
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/129 (29%), Positives = 55/129 (42%)
Frame = +2
Query: 212 LEGGRSVPGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 391
L+ + PG VVG V+ I R AA AG+P+ PV +NR C SG Q++
Sbjct: 84 LDNTKINPGEIGDIVVGTVLGPGSQRAIEC-RAAAFYAGVPENVPVRTVNRQCSSGLQAV 142
Query: 392 VNSAQDILTGAQDLSSGGSREHVASALRGQKREVRHGSGTNYAFEDTLLGPDSRTHTAGL 571
+ A I G D+ G E ++ G + +V +D LL P T
Sbjct: 143 ADVAAAIKAGFYDIGIGAGLESMSVNAMGWEGQVNPKVNEVQKAQDCLL-PMGITSENVA 201
Query: 572 PHWGXTAEE 598
+G T +E
Sbjct: 202 HRYGVTRQE 210
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/79 (31%), Positives = 44/79 (55%)
Frame = +2
Query: 233 PGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDI 412
P ++ +G V+S++ G R AAL AG+P P +N++C SG ++++ +AQ I
Sbjct: 58 PALVQEVFMGNVLSANL--GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTI 115
Query: 413 LTGAQDLSSGGSREHVASA 469
G D+ G E +++A
Sbjct: 116 QLGMHDVVVAGGMESMSNA 134
Score = 43.6 bits (98), Expect = 2e-04
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Frame = +3
Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSSLHHK 284
+ + IVG RTP G G + AT+L ++A AL+ A V PA V + +
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANL 74
Query: 285 LTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF-*PAHKISVAGGVENMS 461
R + L C+ + A +T H + VAGG+E+MS
Sbjct: 75 GQAPARQAALGAGLP--DTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMS 132
Query: 462 QAPFAVRNVRFGTALG 509
AP V R G+ G
Sbjct: 133 NAPKYVAAARRGSRFG 148
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = +2
Query: 254 VVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDL 433
VVG V++ I R AA AG P P++ +NR C SG Q++ N A +I G D+
Sbjct: 100 VVGTVLAPGSQRAIEC-RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDI 158
Query: 434 SSGGSRE 454
E
Sbjct: 159 GIAAGLE 165
>03_04_0186 + 18215475-18215993,18216248-18216262,18216607-18216894
Length = 273
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 532 GVFEGVVGPRAVPNLTFLTAKGACDMFSTPPATEI 428
G F +GPRA+P+LTFL G + PP +
Sbjct: 114 GPFPSFLGPRALPDLTFLRLDGNRLSGAIPPTATV 148
>12_02_0620 - 21283946-21284164,21284480-21284505,21285295-21285442
Length = 130
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 294 IPSVCDEEMTWPTTCCRPEPGTLRPPSRHQPWLS 193
+P D T P R G LRPP+ PW+S
Sbjct: 94 VPESHDNGFTQPPVSGRGTIGFLRPPTSRAPWIS 127
>03_05_0976 -
29341981-29342229,29342388-29342621,29342771-29343046,
29343181-29343457,29343549-29343847,29344021-29344152,
29344451-29344660,29344812-29344875,29346114-29346260,
29346477-29346760
Length = 723
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 218 GGRSVPGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLG---INRLCGSGFQS 388
GG+ P V V++ + G++T +HA + +G ++G ++ C F S
Sbjct: 575 GGKLWPIMHSTLVFALVLTQTIALGVFTIKHATISSGF-TVLLIIGTVLFHQYCRHRFSS 633
Query: 389 IVN--SAQDILTGAQDLSSGGSREHV 460
I N SAQD++ +D G E +
Sbjct: 634 IFNSFSAQDLIEMDRDDEQSGRMEEI 659
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = -2
Query: 629 WLNSETGLPKLLRRSXPNGGVPQYESESPAPEGCLRRRSWSQSRAEPHVSDREGRLRHVL 450
W + P + + P+ Q + E R SR+E + DR+ RLRH
Sbjct: 174 WEHDRHHEPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAY-KDRDSRLRHSD 232
Query: 449 YSPRY*DLVRRSKCPER 399
+ D R + PER
Sbjct: 233 RGSKDHDRYRHDRSPER 249
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 302 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 418
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>04_01_0298 - 3981944-3982348
Length = 134
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 417 PAHKISVAGGVENMSQAPFAVRNVRFGTALGPTTPSKTPFWG 542
P H+I+ GG +S A + R L P TP+ P WG
Sbjct: 72 PVHRITFVGGPRTLSTACKSTRPSGKKPKLDPETPTSEP-WG 112
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -2
Query: 566 PQYESESPAPEGCLRRRSWSQSRAEPHVSDREGRLRHVLYSPRY*DLVRRSKCP-ERCSR 390
P ++ E P E L +SW A S R YS R + VR+S P E +
Sbjct: 535 PSFDLEKPETEESLALKSWFDDSASTTPSSETFR-----YSTRRPEKVRKSLSPDEIADK 589
Query: 389 SIGNQSRIVC*CRA 348
S GN C A
Sbjct: 590 STGNAEEDKSTCNA 603
>12_01_0399 +
3152219-3152721,3152995-3153127,3155013-3155097,
3155321-3155586
Length = 328
Score = 27.9 bits (59), Expect = 8.1
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 5/137 (3%)
Frame = +2
Query: 170 HIRDRTADDS--HGWCLEGGRSVPGSGRQHVVGQVISSSQTDGIYTP--RHAALKAGIPQ 337
H+R + D + G+ L+GG G G G S DG+ +P +AL G+P
Sbjct: 85 HMRSLSLDTAFFEGFSLQGGGGGGGGGGSGGSGGHKRSGSMDGVNSPFEGESALSGGLPD 144
Query: 338 -EKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQKREVRHGSGTN 514
K + R+ A+ IL Q + R+ ++ +K + T
Sbjct: 145 YAKKAMPAERIAELALID-PKRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATT 203
Query: 515 YAFEDTLLGPDSRTHTA 565
+ + TLL D+ TA
Sbjct: 204 LSAQLTLLQRDTSGLTA 220
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 114 FIVGAKR-TPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSW 260
F++ AK P+ F F T+ LQT T KEA V S+ W
Sbjct: 818 FVLLAKLYMPYAFFNACFNGTNLARLQTATTQDQSKEACVLNFDPKSIDW 867
>07_01_0474 + 3579653-3579821,3580407-3580744
Length = 168
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 179 DRTADDSHGWCLEGGRSVPGSGRQHVVGQVISSSQTDGIYT 301
D T D HGW LE + G+ +G + + T G +T
Sbjct: 26 DYTVGDGHGWTLEYPSTNWADGKSFQIGDKLVFTYTKGKHT 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,316,482
Number of Sequences: 37544
Number of extensions: 517288
Number of successful extensions: 1597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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