Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060245.seq
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35) 33 0.17
SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8) 31 0.89
SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16) 31 1.2
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_13170| Best HMM Match : YTV (HMM E-Value=2.8) 29 3.6
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 29 4.7
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.2
SB_40003| Best HMM Match : YTV (HMM E-Value=8.9) 28 8.3
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08) 28 8.3
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +2
Query: 212 LEGGRSVPGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 391
+E G+ P + + G V+ + D Y RH +K+ +P P L +NRLCGSGFQSI
Sbjct: 738 MESGKVDPATVDSVIFGNVLQCAN-DAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSI 796
Query: 392 VNSAQ 406
++ AQ
Sbjct: 797 ISGAQ 801
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 126 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAK-SSLHHKLTESTR 302
AKRT FG FGG ++ +AT L A+V A++ V PA VDS+ + + R
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCANDAAYVAR 768
Query: 303 HVTRRSKL 326
H+ +SK+
Sbjct: 769 HIGIKSKV 776
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +2
Query: 254 VVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDL 433
++GQV+++ Q G R AA+ AGIP P G+N LCGSG +++ Q + G ++
Sbjct: 58 ILGQVLTAGQGQG--PARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNI 115
Query: 434 SSGGSREHVASA 469
G +E ++ A
Sbjct: 116 VVAGGQESMSQA 127
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
+ + I A RTP G+ G + A EL +I AL A +SP V +
Sbjct: 8 RDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEV 57
>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
Length = 415
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 329 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQ 427
+P P IN++C SG +SI+ +AQ ++ G+Q
Sbjct: 26 LPISTPCTTINKVCASGMKSIMAAAQSLMCGSQ 58
>SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)
Length = 337
Score = 31.1 bits (67), Expect = 0.89
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Frame = +2
Query: 191 DDSHGWCLEGGRSVPG--SGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 364
+D G C +G ++ G +G ++ S I+ H+ PQ P++G++
Sbjct: 233 EDCRGQCYDGAGNMAGRLNGASSLIRAEHEKSLKFQIFWGEHS------PQTPPIVGVS- 285
Query: 365 LCGSGFQSIVNSAQDILTGAQDLSSGG----SREHVASALRGQKREVRHGSGTN 514
G S+ N +L +S G S+E V+ +R + +RHG+G+N
Sbjct: 286 ---VGNYSLKNLDPPLLNTVTTVSKAGRVNISQEAVSLRVRENEGALRHGTGSN 336
>SB_40587| Best HMM Match : DEP (HMM E-Value=7.4e-16)
Length = 625
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 386 SIVNSAQDILTGAQDLSSGGSREHVASALRGQKREVRHGSGTNYAFEDTLLGPDSRTHTA 565
+ VNS +D+L +QD+S+G RG+ R + A DT+ ++ T
Sbjct: 31 AFVNSPEDVLESSQDVSNGILSTSTGGKPRGRGR--KKARARQIAITDTMEDSNNSTSET 88
Query: 566 GLP 574
G P
Sbjct: 89 GTP 91
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = -1
Query: 510 VPEPCRTSRF*PRRALATCSLLPPLLRSCAPVKMS*ALFTIDWKPE-PHSLLMPSTGFS* 334
VP PC T+ + + T +LPP + K++ + P P +L+P+T
Sbjct: 277 VPGPCVTTTCIKTKDVTTTKVLPPQTCTVTTTKLATCTPSQTCYPNVPACVLIPAT---- 332
Query: 333 GIPALSAA*RGV*IPSVCDEEMTWPTTCCRPEPGTLRPPS 214
P ++ SV E PT C +RPPS
Sbjct: 333 -TPCVATTTTCFKETSVTKTEFIRPTVTCTETTTKIRPPS 371
>SB_13170| Best HMM Match : YTV (HMM E-Value=2.8)
Length = 281
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 647 VPXFGLWLNSETGLPKLLRRSXPNGGVPQYESESP 543
VP + NSETG+P + GVP YE+ P
Sbjct: 140 VPYYENMANSETGVPYYENMANSETGVPYYETGVP 174
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 647 VPXFGLWLNSETGLPKLLRRSXPNGGVPQYESESP 543
VP + NSETG+P + GVP YE+ P
Sbjct: 186 VPYYENMANSETGVPYYENMANSETGVPYYETGVP 220
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 647 VPXFGLWLNSETGLPKLLRRSXPNGGVPQYESESPAPEG 531
VP + NSETG+P + GVP YE+ + + G
Sbjct: 127 VPYYENMANSETGVPYYENMANSETGVPYYENMANSETG 165
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 647 VPXFGLWLNSETGLPKLLRRSXPNGGVPQYESESPAPEG 531
VP + NSETG+P + GVP YE+ + + G
Sbjct: 173 VPYYENMANSETGVPYYENMANSETGVPYYENMANSETG 211
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 647 VPXFGLWLNSETGLPKLLRRSXPNGGVPQYESESP 543
VP + NSETG+P + + GVP Y++ P
Sbjct: 94 VPYYENMANSETGVPYYENMANSDTGVPYYDTGVP 128
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 574 GESRSMSPRVRPQKGVFEGVVGPRAVPNLTFLTAKGACDMFSTPPATEILCAGQNV 407
GE ++ + + +KG+FE P L LT+ A D PPA E+ AG V
Sbjct: 125 GEPKTGNALYKAKKGLFEVSSRPGVSHALVLLTSGSASDEIG-PPALELRNAGVKV 179
>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = +2
Query: 236 GSGRQHVVGQVISSSQ----TDGIYTPRHAALKAGIPQEKPVLGINRLCGS 376
G GR Q + SS D P HA K P+E + G+ R GS
Sbjct: 5 GRGRGRSTAQTVDSSPPRPGADSAKAPIHADQKTASPKESDLTGLKRALGS 55
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -3
Query: 202 VAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYT 74
VA+ S+V+ V + TPPK+P L T+ PL A +++ +T
Sbjct: 66 VALKESNVSPVPKTTPPKIPEEDLRPVTLTSPL--AKVMEGFT 106
>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 605 PKLLRRSXPNGGVPQYESESPAPEGCLRRRSWSQSRAEPHVSDRE 471
PK L P +YE++S AP+G + ++S + +RE
Sbjct: 41 PKHLLSETPEDQDAEYETQSLAPQGVYTEETLNESEVNDDLEERE 85
>SB_40003| Best HMM Match : YTV (HMM E-Value=8.9)
Length = 128
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 647 VPXFGLWLNSETGLPKLLRRSXPNGGVPQYESESP 543
VP + NSETG+P + GVP Y++ P
Sbjct: 80 VPYYENMANSETGVPYYENMANSETGVPYYDTGVP 114
>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 635 GLWLNSETGLPKLLRRSXPNGGVPQYESESPAPE 534
GLW+ LL+R P G + ES+ P PE
Sbjct: 420 GLWVTGHPTAMGLLKRVMPVGLLNYLESDEPVPE 453
>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
Length = 456
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 185 TADDSHGWCLEGGRSVPGSGRQHVVG-QVISSSQTDGIYTP 304
T D+S G L G R P S R+H+ Q++ TD +P
Sbjct: 126 TEDESSGMVLLGCRGPPSSDRRHMAAMQIMLDYLTDSSISP 166
>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 575 GGVPQ-YESESPAPEGCLRRRSWSQSRAEPHVSDREGRLRHVL 450
GGV + Y ++P CLR R W + HVS+ E H L
Sbjct: 218 GGVTEPYAEKTPL---CLRLRGWGKRILRAHVSEAEDDTNHNL 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,259,458
Number of Sequences: 59808
Number of extensions: 531451
Number of successful extensions: 1270
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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