Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060245.seq
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 87 1e-17
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 55 6e-08
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 46 3e-05
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 34 0.11
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 29 2.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z67734-2|CAA91528.2| 247|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 86.6 bits (205), Expect = 1e-17
Identities = 54/126 (42%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Frame = +2
Query: 251 HVV-GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQ 427
HV+ G V++SS+ DGIY RH LK+G+PQ L +NRLCGSGFQ++VN+AQ I G
Sbjct: 52 HVIFGNVVASSR-DGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGES 110
Query: 428 DLSSGGSREHVASALRGQKREVRHGS--GTNYAFEDTLLGPDSRTHTAGLPHWGXTAEEA 601
++ G E++ S + R++R G+ G Y FED L DS + G TAE+
Sbjct: 111 NIVLAGGTENM-SMVPFAVRDIRFGTALGKKYEFEDMLW--DSLSDPYAKLAMGQTAEKL 167
Query: 602 *GAQFR 619
GAQ++
Sbjct: 168 -GAQYK 172
Score = 80.2 bits (189), Expect = 1e-15
Identities = 59/151 (39%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Frame = +3
Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAK--SSLH 278
K +FIVGAKRT FGTFGG + SAT+L +A+ ALK A V VD + + +S
Sbjct: 4 KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR 63
Query: 279 HKLTESTRHVTRRS----KLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKISVAGG 446
+ S RH+ +S + L +R S + A+V+ L I +AGG
Sbjct: 64 DGIYLS-RHIGLKSGVPQNVGALTVNRLCGS-GFQAVVNAAQAIKL----GESNIVLAGG 117
Query: 447 VENMSQAPFAVRNVRFGTALGPTTPSKTPFW 539
ENMS PFAVR++RFGTALG + W
Sbjct: 118 TENMSMVPFAVRDIRFGTALGKKYEFEDMLW 148
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +2
Query: 212 LEGGRSVPGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 391
LE G P S ++ +GQV ++ G R AAL AG+ V +N++C SG ++I
Sbjct: 58 LERGAVKPSSIQEVFLGQVCQANA--GQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAI 115
Query: 392 VNSAQDILTGAQDLSSGGSREHVASA-LRGQKREVRHG 502
+ +AQ I TG QD + GG E ++ Q+ E+ +G
Sbjct: 116 ILAAQQIQTGHQDFAIGGGMESMSQVPFYVQRGEIPYG 153
Score = 46.8 bits (106), Expect = 1e-05
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Frame = +3
Query: 99 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSSLH 278
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + + +
Sbjct: 20 SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79
Query: 279 HKLTESTRHVTRRSKL-----VFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKISVAG 443
+ R + L V CS+ L + + T + F ++ G
Sbjct: 80 NAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDF------AIGG 133
Query: 444 GVENMSQAPFAVR 482
G+E+MSQ PF V+
Sbjct: 134 GMESMSQVPFYVQ 146
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 99 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
S K +FI+ RTP G + G F N A EL T+A A++ +GV+P +++ +
Sbjct: 2 SDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEV 53
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQD 430
R +L AG+P + +N++C S +++V +A +I G D
Sbjct: 69 RQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYD 110
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Frame = +3
Query: 99 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMS-WAKSSL 275
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + + +
Sbjct: 98 SNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVC 157
Query: 276 HHKLTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKISVAGGVEN 455
H +++ + L + + + +++ + A + +++ GG+E+
Sbjct: 158 HANAGQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGGGMES 217
Query: 456 MSQAPFAVRNV 488
MSQ PF + V
Sbjct: 218 MSQVPFFLARV 228
Score = 44.8 bits (101), Expect = 6e-05
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 212 LEGGRSVPGSGRQHVV--GQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQ 385
LE G P S ++ V GQV ++ G + R AAL AG+ V +N+ SG +
Sbjct: 136 LERGAVKPSSIQEANVFLGQVCHANA--GQASARQAALGAGLDLSVAVTTVNKGWSSGMK 193
Query: 386 SIVNSAQDILTGAQDLSSGGSREHVA 463
+I+ +AQ I TG QDL+ GG E ++
Sbjct: 194 AIILAAQQIQTGHQDLAIGGGMESMS 219
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 33.9 bits (74), Expect = 0.11
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Frame = +3
Query: 87 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAK 266
+ ++ I +V A RTPF G VF++ A +LQ A +++ + Q+D +
Sbjct: 18 VAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGT 77
Query: 267 SSLHHKLTESTRHVTRRSKLVFLKRSRCSAST-DYAALVSNRS*T---ALRTF*PAHKIS 434
K T ++ R + L+ + A T A + SN + T + A+ I
Sbjct: 78 VIQECK----TSNIAREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAI- 132
Query: 435 VAGGVENMSQAPFAV-RNVR---FGTALGPTTPSKTPFWGRTLGLIL 563
+AGGVE +S P RN R G PSK G+ + +L
Sbjct: 133 IAGGVELLSDVPIRYNRNARKAMLGMNKAKDVPSKLKIGGQIVKNLL 179
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 267 TWPTTCCRPEPGTLRPPSRHQP 202
TWP +C RPEP + P + P
Sbjct: 74 TWPASCRRPEPRSSSQPKENPP 95
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 267 TWPTTCCRPEPGTLRPPSRHQP 202
TWP +C RPEP + P + P
Sbjct: 47 TWPASCRRPEPRSSSQPKENLP 68
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 170 HIRDRTADDSHGWCLEGGRSVPGSGRQHVVGQVI 271
H+R AD +G+ E ++P + QH VG++I
Sbjct: 2340 HLRATAADGVYGFIAEVS-ALPSNAEQHTVGEII 2372
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 622 IPKLGSLSFFGGXAPMGESRSMSPRVRPQKGVFEGVVGP 506
IP L S+ FGG P+G S P + EG GP
Sbjct: 550 IPALRSIPGFGGNIPVGTGASSVPN-KNLNDAIEGFTGP 587
>Z67734-2|CAA91528.2| 247|Caenorhabditis elegans Hypothetical
protein B0198.2 protein.
Length = 247
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = -2
Query: 620 SETGLPKLLRRSX--PN---GGVPQYESESPAPEGCLRRRSWSQSRAE-PHVSDREGRLR 459
SE G+P+++ P G +P ++E P+PE CL ++ S + P+ DR L
Sbjct: 114 SENGIPRMVHTGGRLPRSSIGCIPPRQAERPSPEQCLIYSQYNASLNKLPNHDDRYYAL- 172
Query: 458 HVLYSPRY*DLVRRSKCPERCSR 390
PR+ + + S P R R
Sbjct: 173 -----PRHMNNHKNSSSPRRSPR 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,044
Number of Sequences: 27780
Number of extensions: 379951
Number of successful extensions: 945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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