Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060245.seq
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    26   0.30 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.68 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.68 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.90 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   6.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.4  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 419 RSKCPERCSRSIGNQSRIVC*CRAPASLEEYQL*APRDVA 300
           R+K  E+  R +  ++ + C CR   S+EEY +  P+++A
Sbjct: 94  RAKPGEKKFRKVITKAPLECMCRPCTSVEEYAI-IPQEIA 132


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 535 SGAGLSDSYCGTPPLGXDRRRSLGSPVSE 621
           SGA L  +  G+PPL  D   + G PV++
Sbjct: 46  SGAWLDCTATGSPPLNIDWSTADGHPVND 74



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 610  GSLSFFGGXAPMGESRSMSPRVRPQKGVFEGVVGPRAVPNLTFL 479
            G+ S     +PM E +S+  R R  +     ++ P +V   TF+
Sbjct: 1821 GTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETTFV 1864



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 221 GRSVPGSGRQHVVGQVISSSQTD-GIY 298
           GR +PG+GRQ  + ++   ++ D G+Y
Sbjct: 371 GRQLPGTGRQSELLRLNGINREDRGMY 397


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 535 SGAGLSDSYCGTPPLGXDRRRSLGSPVSE 621
           SGA L  +  G+PPL  D   + G PV++
Sbjct: 46  SGAWLDCTATGSPPLNIDWSTADGHPVND 74



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 610  GSLSFFGGXAPMGESRSMSPRVRPQKGVFEGVVGPRAVPNLTFL 479
            G+ S     +PM E +S+  R R  +     ++ P +V   TF+
Sbjct: 1817 GTSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPISVAETTFV 1860



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 221 GRSVPGSGRQHVVGQVISSSQTD-GIY 298
           GR +PG+GRQ  + ++   ++ D G+Y
Sbjct: 371 GRQLPGTGRQSELLRLNGINREDRGMY 397


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 199  AIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 62
            A+V SS + ++   PP  PNGV+   T+      A+   +   P N
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPN 1233


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 212 LEGGRSVPGSGRQH 253
           L  G S PG+GR+H
Sbjct: 389 LVSGSSTPGTGREH 402


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 292 NLHATSRGAQSWYSSREAGARHQQ 363
           +LH T    + W+ +R A A+  Q
Sbjct: 45  SLHLTETQVKIWFQNRRAKAKRLQ 68


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = -1

Query: 246 RP-EPGTLRPPSRHQ 205
           RP  PG ++PP++HQ
Sbjct: 110 RPASPGYVQPPTKHQ 124


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 492 FGTALGPTTPSKTPFWGRTLGLIL 563
           F  + G   P   PF+G T  LIL
Sbjct: 28  FWKSRGVVGPKPVPFFGTTKDLIL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,005
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)