Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060245.seq
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 48 8e-06
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 48 8e-06
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 48 8e-06
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 46 3e-05
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 45 4e-05
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 45 4e-05
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 43 2e-04
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 43 2e-04
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 43 2e-04
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 38 0.005
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At1g53050.1 68414.m06007 protein kinase family protein contains ... 30 1.3
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.2
At4g17270.1 68417.m02596 Mo25 family protein similar to MO25 pro... 29 2.9
At1g63850.1 68414.m07227 PRLI-interacting factor-related similar... 29 3.9
At5g49680.1 68418.m06151 cell expansion protein, putative simila... 28 5.1
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 5.1
At2g31380.1 68415.m03835 zinc finger (B-box type) family protein... 28 5.1
At1g52640.1 68414.m05944 pentatricopeptide (PPR) repeat-containi... 28 6.8
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 47.6 bits (108), Expect = 8e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSS 272
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 273 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 437
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 438 AGGVENMSQAPFAVRNVRFGTALGPTT 518
AGG+E+MS P + + R G+ LG T
Sbjct: 123 AGGMESMSNVPKYLPDARRGSRLGHDT 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVAS 466
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSN 131
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 47.6 bits (108), Expect = 8e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSS 272
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 273 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 437
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 438 AGGVENMSQAPFAVRNVRFGTALGPTT 518
AGG+E+MS P + + R G+ LG T
Sbjct: 123 AGGMESMSNVPKYLPDARRGSRLGHDT 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVAS 466
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSN 131
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 47.6 bits (108), Expect = 8e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSS 272
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 273 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 437
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 438 AGGVENMSQAPFAVRNVRFGTALGPTT 518
AGG+E+MS P + + R G+ LG T
Sbjct: 123 AGGMESMSNVPKYLPDARRGSRLGHDT 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVAS 466
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSN 131
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 484
R AA AG P+ P+ +NR C SG Q++ + A I G D+ G E + + RG K
Sbjct: 109 RMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPRGWK 168
Query: 485 REV 493
V
Sbjct: 169 GSV 171
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/91 (31%), Positives = 47/91 (51%)
Frame = +2
Query: 233 PGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDI 412
P ++ V G V+S++ G R AAL AGIP +N++C SG ++++ +AQ I
Sbjct: 54 PALVQEVVFGNVLSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSI 111
Query: 413 LTGAQDLSSGGSREHVASALRGQKREVRHGS 505
G D+ G E +++ + E R GS
Sbjct: 112 QLGINDVVVAGGMESMSNTPK-YLAEARKGS 141
Score = 44.8 bits (101), Expect = 6e-05
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSS 272
S + + + IVG RTP G F G + AT+L ++A ALK A V PA V + + +
Sbjct: 7 SVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFG-NV 65
Query: 273 LHHKLTESTRHVTR-----RSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 437
L L ++ + ++ ++ AS A +++ +S + + V
Sbjct: 66 LSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQL-----GINDVVV 120
Query: 438 AGGVENMSQAPFAVRNVRFGTALG 509
AGG+E+MS P + R G+ G
Sbjct: 121 AGGMESMSNTPKYLAEARKGSRFG 144
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/91 (31%), Positives = 47/91 (51%)
Frame = +2
Query: 233 PGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDI 412
P ++ V G V+S++ G R AAL AGIP +N++C SG ++++ +AQ I
Sbjct: 49 PALVQEVVFGNVLSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSI 106
Query: 413 LTGAQDLSSGGSREHVASALRGQKREVRHGS 505
G D+ G E +++ + E R GS
Sbjct: 107 QLGINDVVVAGGMESMSNTPK-YLAEARKGS 136
Score = 44.4 bits (100), Expect = 7e-05
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Frame = +3
Query: 90 MSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKS 269
M+ + IVG RTP G F G + AT+L ++A ALK A V PA V + + +
Sbjct: 1 MNVDESDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFG-N 59
Query: 270 SLHHKLTESTRHVTR-----RSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAHKIS 434
L L ++ + ++ ++ AS A +++ +S + +
Sbjct: 60 VLSANLGQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQL-----GINDVV 114
Query: 435 VAGGVENMSQAPFAVRNVRFGTALG 509
VAGG+E+MS P + R G+ G
Sbjct: 115 VAGGMESMSNTPKYLAEARKGSRFG 139
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 43.2 bits (97), Expect = 2e-04
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSWAKSS 272
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 273 LHHKLTESTRHVTRRSKLVF-----LKRSRCSASTDYAALVSNRS*TALRTF*PAHKISV 437
+ R + + + C+A L S L + I V
Sbjct: 69 TANLGQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGL------NDIVV 122
Query: 438 AGGVENMSQAPFAVRNV-RFGTALGPTT 518
AGG+E+MS P + + R G+ LG T
Sbjct: 123 AGGMESMSNVPKYLPDASRRGSRLGHDT 150
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQK 484
R AAL AGIP IN++C +G +S++ ++Q I G D+ G E +++ +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLP 137
Query: 485 REVRHGS 505
R GS
Sbjct: 138 DASRRGS 144
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +2
Query: 254 VVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDL 433
VVG VI+ + R AA AG P PV +NR C SG Q++ + A I G D+
Sbjct: 100 VVGTVIAPGSQRAMEC-RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDI 158
Query: 434 SSGGSREHVAS 466
G E +++
Sbjct: 159 GIGAGVESMST 169
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +2
Query: 254 VVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDL 433
VVG VI+ + R AA AG P PV +NR C SG Q++ + A I G D+
Sbjct: 57 VVGTVIAPGSQRAMEC-RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDI 115
Query: 434 SSGGSREHVAS 466
G E +++
Sbjct: 116 GIGAGVESMST 126
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVAS 466
R AA AG P+ V +NR C SG Q++ + A I G D+ G E + +
Sbjct: 117 RMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 170
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 425 QDLSSGGSREHVASALRGQKREVRHGSGTNYAF 523
++ S+G E+V +A RG++ EVR G+G ++F
Sbjct: 327 RETSNGNVVENVGNADRGREDEVRSGNGRRFSF 359
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 224 RSVPGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGS 376
RS GR++ SS D P AA + G PQ++ G+ RL GS
Sbjct: 549 RSASAKGRRNYQDSQKVSSIADYSAMPGFAATRTGAPQQETCRGMTRLPGS 599
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 182 RTADDSHGWCLEGGRSVPGSGRQHVVGQVISSSQTDGIYTPRHAALKAGIPQEKPV 349
+T + HG+ G SVPGS + G +S+ T + A +GIP PV
Sbjct: 207 QTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSM-PALQAPYPSGIPGPAPV 261
>At4g17270.1 68417.m02596 Mo25 family protein similar to MO25
protein (early mouse development protein family) [Mouse]
SWISS-PROT:Q06138
Length = 343
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +3
Query: 243 VDSMSWAKSSLHHKLTESTRHVTRRSKL-----VFLKRSRCSASTDYAALVSN 386
+ + W + + KL EST ++TRR + + L RS + T Y + + N
Sbjct: 208 IKNEDWFFADYNSKLLESTNYITRRQAIKLLGDILLDRSNSAVMTKYVSSMDN 260
>At1g63850.1 68414.m07227 PRLI-interacting factor-related similar to
PRLI-interacting factor G (GI:11139264) [Arabidopsis
thaliana]; contains Prosite PS00037: Myb DNA-binding
domain repeat signature 1
Length = 548
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 211 APTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 62
+PT+ + +S AD + K P ++ NGVL +P+ + A T VN
Sbjct: 56 SPTLFEMMASEADTIGKVPVQIHNGVLPSPSSSSSSSSAAATAARTTNVN 105
>At5g49680.1 68418.m06151 cell expansion protein, putative similar to
SABRE [Arabidopsis thaliana] GI:719291
Length = 1378
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 413 LTGAQDLSSGGSREHV-ASALRGQKREVRHGSGTNYAFEDTL 535
L A DL G + + +S +RG RE+R S + ++E+T+
Sbjct: 1057 LLAASDLGQGSKNQSLKSSTIRGSGRELRRTSSFDRSWEETV 1098
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 629 WLNSETGLPKLLRRSXPNGGVPQYESESPAPEGCLRRRSWSQS 501
WL E +L+ RS P+ V ++ APE +R W++S
Sbjct: 171 WLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKRPYWTES 213
>At2g31380.1 68415.m03835 zinc finger (B-box type) family protein /
salt tolerance-like protein (STH) contains Pfam profile
PF00643: B-box zinc finger; identical to cDNA B-box zinc
finger protein STH GI:12698721, SP|Q9SID1 Salt
tolerance-like protein (Arabidopsis thaliana)
Length = 238
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 463 CDMFSTPPATEILCAGQNVLSAVHDRLETRAA*SVDAEH-RLLLRNTS 323
CD+ PAT I CA + L A D +E AA + ++H RL L + S
Sbjct: 5 CDVCEKAPATLICCADEAALCAKCD-VEVHAANKLASKHQRLFLDSLS 51
>At1g52640.1 68414.m05944 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 523
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 359 NRLCGSGFQSIVNSAQDILTGAQDLSSGGSREHVASALRGQKREV 493
NRL G G +V D+L G + SS S + +A +RG++R +
Sbjct: 462 NRLVGWGQMDVV----DVLAGKMERSSSCSVQDMAVEMRGKRRRL 502
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,215
Number of Sequences: 28952
Number of extensions: 363084
Number of successful extensions: 991
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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