Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060244.seq
(677 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 191 1e-47
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 85 2e-15
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 77 4e-13
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 75 1e-12
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 72 1e-11
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 69 8e-11
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 67 3e-10
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 61 3e-08
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 60 5e-08
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 56 8e-07
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 49 9e-05
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 48 2e-04
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 48 3e-04
UniRef50_A7CHG0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q3Y1Q7 Cluster: Putative secreted protein precursor; n=... 34 3.7
UniRef50_A5V1I2 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_A4RTX8 Cluster: Predicted protein; n=2; Ostreococcus|Re... 33 4.8
UniRef50_Q5KBU3 Cluster: Expressed protein; n=1; Filobasidiella ... 33 4.8
UniRef50_Q11W55 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
UniRef50_Q048R6 Cluster: Biotin carboxylase; n=2; Lactobacillus ... 33 8.4
UniRef50_A5G2F1 Cluster: Putative uncharacterized protein precur... 33 8.4
UniRef50_A0BJW2 Cluster: Chromosome undetermined scaffold_110, w... 33 8.4
UniRef50_O60052 Cluster: Protein farnesyltransferase/geranylgera... 33 8.4
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 191 bits (466), Expect = 1e-47
Identities = 96/131 (73%), Positives = 100/131 (76%), Gaps = 1/131 (0%)
Frame = +3
Query: 270 TKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYE 449
TKVDISS EPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYE
Sbjct: 1230 TKVDISSAEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYE 1289
Query: 450 NGAQTLSVIAPKHDSKYDPTYFRPPLPKDSVSDPPSFLTDFLLLT-KSLAHFWFHLYVEP 626
NGAQTLSVIAPKHDSKYDPT + K + PSFL L + + L F F
Sbjct: 1290 NGAQTLSVIAPKHDSKYDPTLLSASIAK-RLRFRPSFLPYRLSPSDEVLGTFLFSSLCRA 1348
Query: 627 IKRHPNHKGSF 659
KRHPNHK F
Sbjct: 1349 YKRHPNHKVPF 1359
Score = 185 bits (450), Expect = 1e-45
Identities = 86/88 (97%), Positives = 86/88 (97%)
Frame = +1
Query: 10 GGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQS 189
GGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQS
Sbjct: 1143 GGSYDFSAYRSYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQS 1202
Query: 190 SAIPRLDTHHLPETRRPLHFDILPLSLP 273
SAIPRLDTHHLPETRRPLHFDI P SLP
Sbjct: 1203 SAIPRLDTHHLPETRRPLHFDI-PSSLP 1229
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 84.6 bits (200), Expect = 2e-15
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +3
Query: 309 AIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKH 488
AIEPVYPG ++++A+L + P D +S E +GE SNQFP +D P+E GAQT S++AP H
Sbjct: 1273 AIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLH 1332
Query: 489 DSKYDPT 509
+SK+DPT
Sbjct: 1333 NSKHDPT 1339
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/42 (59%), Positives = 30/42 (71%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
P LL ASI KRLRFR S PY ++P DE+LG+ L + CRAY
Sbjct: 1338 PTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAY 1379
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Frame = +1
Query: 97 RAPRSTSAKPLPANDTSDIII--FAPELFDLQSSAIPRLDTHHLPETRRPLHFDI 255
R R+ A PL + D+I+ AP L D ++A P++ TH LPETRRPLHFDI
Sbjct: 1200 RPLRARDAPPLGPDYVGDVILDSSAPILGDGSANA-PQVSTHFLPETRRPLHFDI 1253
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 77.0 bits (181), Expect = 4e-13
Identities = 47/134 (35%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Frame = +3
Query: 285 SSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQT 464
+SV+P PVYPG + ++AA + DP + EI HK + SNQFPW D P+ Q
Sbjct: 1329 TSVDPPQAKASPVYPGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQP 1388
Query: 465 LSVIAPKHDSKYDPTYFRPPLPKD---SVSDPPSFLT-DFLLLTKSLAHFWFHLYVEPIK 632
S+I+ KH +DPT + K SD P +T D ++L L FH
Sbjct: 1389 SSLISAKHAPNHDPTLLPASINKRLRFRPSDSPHQITADDVVLGLQL----FHSLCRAYS 1444
Query: 633 RHPNHKGSFSARPF 674
R PN F+ F
Sbjct: 1445 RQPNSTVPFNPELF 1458
Score = 40.7 bits (91), Expect = 0.032
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +1
Query: 85 PAHTRAPRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDILPL 264
P H R+P +P + D + P L D RLDTH LP +R PLHFD+ P
Sbjct: 1265 PTH-RSPNFHLPPHIPLSYDRDFVTVNPTLPDQGPET--RLDTHFLPPSRLPLHFDLPPA 1321
Query: 265 SLP 273
P
Sbjct: 1322 ITP 1324
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/83 (42%), Positives = 48/83 (57%)
Frame = +3
Query: 285 SSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQT 464
S P+ TA EPVYPG ++ + A + DP EI + + SNQFP VD Y AQ
Sbjct: 1306 SDPAPSGTAFEPVYPGETFENLVAHFLPAHDPTDREIHWRRQLSNQFPHVDKEYHLAAQP 1365
Query: 465 LSVIAPKHDSKYDPTYFRPPLPK 533
++++AP HDSK+DPT + K
Sbjct: 1366 MTLLAPIHDSKHDPTLLAASIQK 1388
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
P LL+ASI KRLRFRPS PYR+SP DE+LG L SLCRAY
Sbjct: 1379 PTLLAASIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAY 1420
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +1
Query: 106 RSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDI 255
RS A + +D SD++ +AP + PR+DT LPETRRPLHFD+
Sbjct: 1245 RSRFAAAVKPSDRSDVLSWAPIAVGDGETNAPRIDTSFLPETRRPLHFDL 1294
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 72.1 bits (169), Expect = 1e-11
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Frame = +3
Query: 303 DTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAP 482
+T PVYPG +++ +AA + DP+ E+ + + S QFPW D P+ Q S+IA
Sbjct: 1365 NTPFTPVYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQPSSLIAA 1424
Query: 483 KHDSKYDPTYFRPPLPKD---SVSDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRHPNHKG 653
KH DPT +PK SD P L+ +L L + F + +R+P H G
Sbjct: 1425 KHSPSQDPTLLPFSIPKRLRFRKSDNPHVLSAIDVL---LGNQLFFNLCKAYRRNPTHVG 1481
Query: 654 SFSARPF 674
F+ F
Sbjct: 1482 PFNPALF 1488
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +1
Query: 127 LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDILPLSLPKWT 282
+P + + D ++ P +F Q A PRLDTH LP TR PL ++LP L + T
Sbjct: 1308 IPTSYSQDFVVSNP-IF--QGQADPRLDTHFLPPTRLPLQSELLPAQLSQTT 1356
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 69.3 bits (162), Expect = 8e-11
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +3
Query: 288 SVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFP-WVDLPYENGAQT 464
S T AI VYPG ++ +AA + DP+ EI H+GEFS QFP ++ + AQ+
Sbjct: 1262 STHVTPAAITAVYPGESFENLAAHFLPAHDPEIKEILHRGEFSAQFPILLNQDFSLSAQS 1321
Query: 465 LSVIAPKHDSKYDPTYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRHP 641
++IA KHDSK DPT + K P + L +H + RHP
Sbjct: 1322 STLIAAKHDSKRDPTLLVASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHP 1380
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/48 (54%), Positives = 30/48 (62%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAYKTTSQS 646
P LL ASI KRL FRPS Y+LS D++LG L S CRAY Q+
Sbjct: 1335 PTLLVASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQA 1382
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 67.3 bits (157), Expect = 3e-10
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +3
Query: 288 SVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTL 467
S EPT EPVYPG ++ +AA + DP EI +G+ SNQFP +D + AQ +
Sbjct: 1445 STEPTTCHPEPVYPGETFENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPM 1504
Query: 468 SVIAPKHDSKYDPTYFRPPLPK 533
S++A H K DPT + K
Sbjct: 1505 SLLAAIHQEKQDPTLLPASIQK 1526
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
P LL ASI KRLRFRPS PY+++P DE+LG L LCRAY
Sbjct: 1517 PTLLPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAY 1558
Score = 39.1 bits (87), Expect = 0.097
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 199 PRLDTHHLPETRRPLHFDILPLSLPK 276
P++ TH LPETRRPLH+DI P ++P+
Sbjct: 1414 PQVSTHFLPETRRPLHWDI-PSAIPE 1438
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 60.9 bits (141), Expect = 3e-08
Identities = 38/129 (29%), Positives = 58/129 (44%)
Frame = +3
Query: 288 SVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTL 467
S EP + VYPG D+ T+AA + DP+ EI K + S QFPW++L + QT
Sbjct: 1233 SDEPVPSDHTAVYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLDFHISCQTS 1292
Query: 468 SVIAPKHDSKYDPTYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRHPNH 647
S+I+ +H D T L K P + L + + + + +R PN
Sbjct: 1293 SLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWCQVYRRDPNV 1352
Query: 648 KGSFSARPF 674
+ F+ F
Sbjct: 1353 RLPFNEALF 1361
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +3
Query: 315 EPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDS 494
E VYPG D + +A + DP LEI + +SNQFP+++ P L+++AP H+
Sbjct: 1451 ETVYPGVDGEALARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQ 1510
Query: 495 KYDPTYFRPPLPK 533
K DPT L K
Sbjct: 1511 KQDPTLLHASLAK 1523
Score = 48.8 bits (111), Expect = 1e-04
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
P LL AS+AKRLRFR S PY ++ D+ LG L SL RAY
Sbjct: 1514 PTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAY 1555
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 56.0 bits (129), Expect = 8e-07
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +3
Query: 306 TAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPK 485
T I P G ++ +AA + DPD E+ + SNQFP++D P+E Q S++AP
Sbjct: 1332 TPISPAICGYTFENLAAFFLPAHDPDLKEVLINDQKSNQFPYLDAPFELSCQPSSLLAPI 1391
Query: 486 HDSKYDPT 509
H DPT
Sbjct: 1392 HKPASDPT 1399
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
P LL SI KRLRFR S PY ++PSD++LG L SSLC AY
Sbjct: 1398 PTLLPGSIKKRLRFRASSSPYSITPSDQLLGQHLFSSLCLAY 1439
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 127 LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDILP 261
+P N + D+++ P L L + PRL+ HLP TR PLH D+LP
Sbjct: 1273 IPTNHSLDVLVSNPVL--LGETLDPRLEVLHLPPTRLPLHLDLLP 1315
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 49.2 bits (112), Expect = 9e-05
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +2
Query: 512 LSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRA 625
L ASI KRLRFRPS PYR++ DE+LG+ L + C A
Sbjct: 1414 LPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTA 1451
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 KPLPANDTSDIII-FAPELFDLQSSAIPRLDTHHLPETRRPLHFDI 255
KPL +D D+++ AP + S P++ TH LPETRRPLHFD+
Sbjct: 1331 KPLAPSDLPDLLVPEAPVILGSGESNAPQVSTHFLPETRRPLHFDV 1376
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 306 TAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPK 485
T P YP ++ +AA + DPD E+ ++ + S+QFP++D P+ Q S+IA
Sbjct: 1235 TPFTPAYPEETFENLAAFFLPAHDPDLKEMLYRDDASSQFPYLDSPFLLSCQPSSLIAAI 1294
Query: 486 HDSKYDPT 509
H D T
Sbjct: 1295 HKPATDST 1302
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +2
Query: 509 LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
LL S+ KRLRFRPS PY +P+D +LG L SLC Y
Sbjct: 1303 LLPLSVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVY 1342
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 47.6 bits (108), Expect = 3e-04
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Frame = +3
Query: 276 VDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENG 455
V SS ++ + G ++ +AA + DPD E+ + S QFP++D PY
Sbjct: 1252 VSTSSTSNSEVPFTHAFLGESFEELAAHFLPAHDPDLKEVTVGDQTSQQFPYLDQPYTLS 1311
Query: 456 AQTLSVIAPKHDSKYDPTYFRPPLPK----DSVSDPPSFLTDFLLLTKSLAHFW 605
Q S++A H DPT + K + S P +F + L+L L W
Sbjct: 1312 CQPSSLLAASHKPASDPTLLIFSISKRLRFRASSSPYAFTPNDLILGHLLYTNW 1365
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 503 PDLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLVSSLCRAY 628
P LL SI+KRLRFR S PY +P+D +LG L ++ C+A+
Sbjct: 1328 PTLLIFSISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAF 1369
Score = 33.1 bits (72), Expect = 6.4
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 85 PAHTRAPRSTSAKP-LPANDTSDIIIFAPELFDLQSSAIP--RLDTHHLPETRRPLHFDI 255
P + P P +P + + D+I+ + +S P RL T HLP TR PLHFD+
Sbjct: 1189 PPSNKWPHRLHLPPHIPTSHSKDVIL----AHGIVASNAPERRLTTLHLPPTRLPLHFDL 1244
>UniRef50_A7CHG0 Cluster: Putative uncharacterized protein; n=1;
Ralstonia pickettii 12D|Rep: Putative uncharacterized
protein - Ralstonia pickettii 12D
Length = 293
Score = 35.1 bits (77), Expect = 1.6
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 611 MKPEMCQGLRQKEKVCKEGRRVGNGVFWQWRPKVSRVIFRVMFGCYNAEGLGAILIREID 432
+KPE G + + K GRR G G+F R+ + GC+ A LGA I D
Sbjct: 60 VKPEEGSG-QTRSVAAKSGRRKGGGLFVMKPLSAERLRVALAVGCFGAIALGAGSIYVRD 118
Query: 431 PWKLI-GELP 405
W G LP
Sbjct: 119 GWSFFKGFLP 128
>UniRef50_Q3Y1Q7 Cluster: Putative secreted protein precursor; n=1;
Enterococcus faecium DO|Rep: Putative secreted protein
precursor - Enterococcus faecium DO
Length = 226
Score = 33.9 bits (74), Expect = 3.7
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 270 TKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFS----NQFPWVD 437
+K DI+ EPT+T +EP+ P K V EP DP++ G + + P+
Sbjct: 31 SKGDITFTEPTNT-VEPLNPTDPSKPV-----EPADPENPATGQTGSLTLDVVPELPFGT 84
Query: 438 LPYENGAQTLSVIAPKHDSKY 500
E+G +T V A K+D+ Y
Sbjct: 85 HEIESGTKTYQVDASKNDTPY 105
>UniRef50_A5V1I2 Cluster: Putative uncharacterized protein; n=1;
Roseiflexus sp. RS-1|Rep: Putative uncharacterized
protein - Roseiflexus sp. RS-1
Length = 548
Score = 33.5 bits (73), Expect = 4.8
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +1
Query: 136 NDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFD----ILPLSLPKWTLVVLNLQ 303
N+TS + APE A PR D H+P P+H D P W + Q
Sbjct: 361 NETSAWRMVAPETCAPACDADPRNDNQHVPTHVSPMHDDEDGRDDPPEWVAWRAALDQAQ 420
Query: 304 TPP*NLSIPAATTKLW 351
T ++S+P A LW
Sbjct: 421 TADGDVSLPWAAPPLW 436
>UniRef50_A4RTX8 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1151
Score = 33.5 bits (73), Expect = 4.8
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 97 RAPRSTSAKPLPANDTSDIIIF-APELFDLQSSAIPRLDTHHLPETRRPLHFDILPLSLP 273
R PRST A+ + AN +D LF++ P +D + P +H D+ LSLP
Sbjct: 249 RTPRSTLARVVRANFVADEYPKDIARLFEMSPDEAP-IDFYLNPNVFTSIHEDMRDLSLP 307
Query: 274 KWTLV 288
W+ V
Sbjct: 308 SWSQV 312
>UniRef50_Q5KBU3 Cluster: Expressed protein; n=1; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 438
Score = 33.5 bits (73), Expect = 4.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 40 SYQKRHHRMTNFKFDPAHTRAPRSTSAKPLPANDTSD 150
SYQ R HR ++DP H R P S+S+ P P T +
Sbjct: 124 SYQHRSHRTHTDQWDPYHPR-PCSSSSSPSPTTSTDE 159
>UniRef50_Q11W55 Cluster: Putative uncharacterized protein; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: Putative
uncharacterized protein - Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469)
Length = 690
Score = 33.1 bits (72), Expect = 6.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 127 LPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPE--TRRPLHFD-ILPLSLPKWTLV 288
L A + D+ +F P + + +S+A + HH P+ T FD ++ + PKW ++
Sbjct: 319 LSAKENIDVSVFIPGISEYKSAAYSLIIFHHFPDETTAGKKEFDALVAMKTPKWYII 375
>UniRef50_Q048R6 Cluster: Biotin carboxylase; n=2; Lactobacillus
delbrueckii subsp. bulgaricus|Rep: Biotin carboxylase -
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC
BAA-365)
Length = 317
Score = 32.7 bits (71), Expect = 8.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 471 VIAPKH-DSKYDPTYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRHPNH 647
++ P+ DS +YF+ PLP S+ + +L+D LL +S H+ V+ H
Sbjct: 58 MVKPRRADSTKGISYFKAPLPLSSLKNQSGYLSDKDLLVESFVHYDRMFTVDGYTDFQGH 117
Query: 648 KGSFS 662
FS
Sbjct: 118 SRFFS 122
>UniRef50_A5G2F1 Cluster: Putative uncharacterized protein
precursor; n=1; Acidiphilium cryptum JF-5|Rep: Putative
uncharacterized protein precursor - Acidiphilium cryptum
(strain JF-5)
Length = 214
Score = 32.7 bits (71), Expect = 8.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 115 SAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHL 222
SA LP N+T D+II AP L L + + R D +L
Sbjct: 85 SALDLPKNETVDVIITAPSLAALTTKGLVRADVRNL 120
>UniRef50_A0BJW2 Cluster: Chromosome undetermined scaffold_110,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_110,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 275
Score = 32.7 bits (71), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 659 KGTFMIGMSFYRLDIEMKPEMCQGLRQKEKVCKEGRRVGNGVFWQWRPKV 510
+G IG+SFY L++ + + L EK+ K W+WRP++
Sbjct: 89 QGIIWIGVSFYYLNVTLYITIVLWLGSLEKMQKRRLEFDRHWHWRWRPRI 138
>UniRef50_O60052 Cluster: Protein
farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; n=1; Schizosaccharomyces pombe|Rep:
Protein farnesyltransferase/geranylgeranyltransferase
type-1 subunit alpha - Schizosaccharomyces pombe
(Fission yeast)
Length = 294
Score = 32.7 bits (71), Expect = 8.4
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = +3
Query: 363 MEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTYFRPPLPKDSV 542
M+P DP+ EI +F+ P +P ++G L+ I + YFR + K
Sbjct: 1 MDPIDPELNEIL---DFTEYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEY 57
Query: 543 SDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRH 638
S LT FL++ AH+ Y I H
Sbjct: 58 SLRALNLTGFLIMNNP-AHYTVWAYRFQILNH 88
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,256,474
Number of Sequences: 1657284
Number of extensions: 18663224
Number of successful extensions: 49549
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 47001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49522
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -