Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060244.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    33   0.050
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.9  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   4.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   5.8  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   5.8  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   5.8  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.8  
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.8  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   7.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   7.6  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.6  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 26/92 (28%), Positives = 39/92 (42%)
 Frame = +3

Query: 363 MEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTYFRPPLPKDSV 542
           M+P DP+  EI    +F+   P   +P ++G   L+ I      +    YFR  + K   
Sbjct: 1   MDPIDPELNEIL---DFTEYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEY 57

Query: 543 SDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRH 638
           S     LT FL++    AH+    Y   I  H
Sbjct: 58  SLRALNLTGFLIMNNP-AHYTVWAYRFQILNH 88


>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 297 PTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVD 437
           PT T+  PVY G     ++A   +PR      +R + E  ++FP  D
Sbjct: 4   PTTTSYSPVYTGNPLYDISASQSDPRQRIRKNVRFQTEV-DEFPDFD 49


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 339 YKTVAALMMEPRDPDSLEIRHKGEFSNQF 425
           ++ VA+ + E   P  LEIR + EFS  F
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMF 189


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 463 PSAL*HPNMTRNMTRLTFGLHCQKTP 540
           P    HP++ RNM+R T GL   + P
Sbjct: 6   PEVAEHPDVLRNMSRYTLGLLPSEPP 31


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 367 NPGTPTPLKSATRGSSPINF 426
           +PGTPT LKS +   SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 229 TRRPL-HFDILPLSLPKWTLVVLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATR 405
           T  P+  + +L  S P  +  VLN  TP  + S+  ++T +      N  TP    S   
Sbjct: 584 TSTPITRYSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 643

Query: 406 GSSPI 420
            S+PI
Sbjct: 644 SSTPI 648



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 32/131 (24%), Positives = 53/131 (40%)
 Frame = +1

Query: 256  LPLSLPKWTLVVLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATRGSSPINFHGS 435
            L  S P  +  V+N  TP  + S+  ++T +      N  TP    S    S+PI+    
Sbjct: 3426 LNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTV 3485

Query: 436  ISLMRMAPKPSAL*HPNMTRNMTRLTFGLHCQKTPFPTLLPSLQTFSF*RSPWHISGFIS 615
            I+   +    S L + +   +   L   L      F +   S  + SF  S    +G +S
Sbjct: 3486 ITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSF--SLTSENGSVS 3543

Query: 616  MSSL*NDIPII 648
             SSL +  P++
Sbjct: 3544 SSSLVSSSPVL 3554



 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 253  ILPLSLPKWTLVVLNLQTPP*NLSIPAATTKLWQL**WNPGTPTPLKSATRGSSPI 420
            +L  S P  +  V+N  TP  + ++  ++T +  L   N  TP    S    S+PI
Sbjct: 2537 VLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPI 2592


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 345 TVAALMMEPRDPDSLEIRHKGEFSNQFPWVDL 440
           T+A L++EPRD   L +  KG    Q PW  +
Sbjct: 264 TIATLVLEPRD---LIVYRKGFALLQIPWTSV 292


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 25  FSAYRSYQKRHHRMTNFKFDPAHTRAP 105
           ++A  S QKR+ R+T    D AH  +P
Sbjct: 178 YAAKASIQKRYERLTKRGVDQAHESSP 204


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +1

Query: 148 DIIIFAPELFDLQSSAIPRLDTHHLPETRRPLHFDILPLSLPKWTLVVLN 297
           DI ++   L DL    +P  +  HL       HF      LP W  V  N
Sbjct: 371 DIAVYQGYLLDLPHFQVPDSELEHLSSLLHGYHFMASSTELP-WLRVTCN 419


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 388 LKSATRGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLT 513
           + +A +  +PIN + S+++    PKPSA  +PN+    TR T
Sbjct: 7   IPTAIQIQNPINNNVSVTISDQLPKPSAN-NPNLLSVDTRPT 47


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 488 MFGCYNAEGLGAILIREI 435
           +FGC++A GLG  L  EI
Sbjct: 64  LFGCWSANGLGIALAYEI 81


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 480 PKHDSKYDPTYFRPPLPKDSVSDPPSFLTDFLLLTK 587
           P H  +++ ++F+PP  K  +    SFLT F   T+
Sbjct: 277 PSHSIEFEDSFFQPPSQKGHMQ--RSFLTTFSAPTR 310


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 540 VSDPPSFLTDFLLLTKSLAHFWFHL 614
           + D P+ L  F LL+K ++HF F L
Sbjct: 309 IVDQPANLLKFSLLSKKVSHFLFTL 333


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +3

Query: 495 KYDPTYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRHPNHKGSFS 662
           +Y P  F  PL  +   +     T+     +   H W H Y E +  HP+    F+
Sbjct: 103 EYLPKTFNTPLYFNENDNAFLISTNAYSAAQERLHIWKHEYQEALSLHPSPTERFT 158


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 462 TLSVIAPKHDSKYDPTYFRPPLPKDSVSDPPSF 560
           TL  I  + D  +DP Y   PL     + PP F
Sbjct: 204 TLDSIGTEQDDCFDPDYSNLPLFPQENASPPLF 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,893
Number of Sequences: 5004
Number of extensions: 73390
Number of successful extensions: 336
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)