Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060244.seq
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0318 - 2495617-2497788                                           29   2.6  
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665...    28   6.0  
05_06_0147 + 25986259-25987701                                         28   6.0  
03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763     28   6.0  
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136...    28   6.0  
09_02_0411 + 8721855-8722232                                           28   7.9  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    28   7.9  

>03_01_0318 - 2495617-2497788
          Length = 723

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 530 WQWRPKVSRVIFRVMFGCYNAEGLGAILIR 441
           WQWR    R+I RV   C+ A   GA+ +R
Sbjct: 196 WQWRVGHRRLIERVAKECHLAGACGAVAVR 225


>07_02_0028 +
           11964941-11964991,11965259-11966101,11966249-11966560,
           11966640-11967073,11967500-11967941
          Length = 693

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 103 PRSTSAKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRPLH 246
           P++T + P   +++   II+AP L        P +  +H P+T   LH
Sbjct: 401 PQTTESSPPRQSNSGKDIIYAPGLIPNGGGLSPPVIGYHAPKTSTLLH 448


>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 118 AKPLPANDTSDIIIFAPELFDLQSSAIPRLDTHHLPETRRP 240
           A P P   T+D    +    D  ++A P +  HHLP    P
Sbjct: 40  AVPTPPASTADFFSSSAPAVDRMAAANPSISFHHLPPPEYP 80


>03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763
          Length = 249

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -3

Query: 417 WRTPPCGGFQGSRGPGVPSL--ELPQFCS 337
           W  PP GG+ G R P  P    E P  CS
Sbjct: 219 WAPPPAGGYYGGRSPYQPPYYDEEPAGCS 247


>02_01_0202 +
           1366149-1366594,1368444-1368444,1368616-1368743,
           1368943-1369039
          Length = 223

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 516 RPPLPKDSVSDPPSFLTDFLLLTKSLAHFWFHLYVEPIKRHPNHKG 653
           R P+P D +S  P F  DF L    L H   +L +   +   N +G
Sbjct: 37  RVPVPGDGLSPIPMFSVDFRLFVLILPHSHGYLVLLGFRSKQNQEG 82


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 577 RRKSVRKEGGSETESFGNGGRK 512
           R+K  R++GG   ES G GGR+
Sbjct: 75  RKKGEREKGGRRRESTGGGGRR 96


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
 Frame = +1

Query: 7   EGGSYDFSAYRSYQKRHHRM---TNFKFDPA-HTRAPRSTSAKPLPANDTSDIIIFAPEL 174
           E G   F    S   RH R    T   F P  HT++   +  +    N     I  A  L
Sbjct: 617 EAGGAAFMRLSSPSPRHSRASFDTAMPFTPRRHTQSSPRSPGRQFSDNPRRQTIAAAASL 676

Query: 175 FDLQSSAIPRLD 210
           F    S+ PRLD
Sbjct: 677 FGADDSSNPRLD 688


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,663,228
Number of Sequences: 37544
Number of extensions: 562597
Number of successful extensions: 1532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)